Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Fall 1 - Sep 5, Summer 5 2023 July 10, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21, Fall 2 2023 Sep 17
Description
makeAnnotsXml.py needs to be edited so that tomato genome assemblies SL4 and SL5 can be used to visualize all the studies.
The sample sheet being used is KP_sample_sheet.xlsx. Once edits have been made, then run the script to remake Quickload/ directory contents.
Observe that direct links into the repository are being used to serve metadata about the Quickload repository.
Attachments
Issue Links
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-3251 [ 22132 ] |
| Description | makeAnnotsXml.py needs to be edited so that tomato genomes SL4 and SL5 can be used for 2021 data. The sample sheet being used is KP_sample_sheet.xlsx. | makeAnnotsXml.py needs to be edited so that tomato genomes SL4 and SL5 can be used for 2021 data. The sample sheet being used is KP_sample_sheet.xlsx. Once edits have been made then run the script with the sample sheet. |
| Story Points | 1 | 2 |
| Assignee | Ann Loraine [ aloraine ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Summer 5 2023 July 10 [ 174 ] | Summer 5 2023 July 10, Summer 6 2023 July 24 [ 174, 175 ] |
| Rank | Ranked higher |
| Summary | Edit XML script to include SL4 and SL5 genome | Edit XML script to include SL4, SL5, Arabidopsis genomes |
| Summary | Edit XML script to include SL4, SL5, Arabidopsis genomes | Edit XML script to include SL4, SL5 tomato genomes |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Sprint | Summer 5 2023 July 10, Summer 6 2023 July 24 [ 174, 175 ] | Summer 5 2023 July 10, Summer 6 2023 July 24, Summer 7 2023 Aug 7 [ 174, 175, 176 ] |
| Rank | Ranked higher |
| Assignee | Molly Davis [ molly ] |
| Assignee | Molly Davis [ molly ] | Ann Loraine [ aloraine ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Summer 5 2023 July 10, Summer 6 2023 July 24, Summer 7 2023 Aug 7 [ 174, 175, 176 ] | Summer 5 2023 July 10, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21 [ 174, 175, 176, 177 ] |
| Rank | Ranked higher |
| Link | This issue relates to IGBF-3418 [ IGBF-3418 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Sprint | Summer 5 2023 July 10, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21 [ 174, 175, 176, 177 ] | Testing 2 : 4 Nov - 15 Nov, Summer 5 2023 July 10, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21 [ 82, 174, 175, 176, 177 ] |
| Rank | Ranked higher |
| Description | makeAnnotsXml.py needs to be edited so that tomato genomes SL4 and SL5 can be used for 2021 data. The sample sheet being used is KP_sample_sheet.xlsx. Once edits have been made then run the script with the sample sheet. |
makeAnnotsXml.py needs to be edited so that tomato genome assemblies SL4 and SL5 can be used to visualize all the studies.
The sample sheet being used is KP_sample_sheet.xlsx. Once edits have been made, then run the script to remake Quickload/ directory contents. Observe that direct links into the repository are being used to serve metadata about the Quickload repository. |
| Assignee | Molly Davis [ molly ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
| Sprint | Fall 1 - Sep 5, Summer 5 2023 July 10, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21 [ 82, 174, 175, 176, 177 ] | Fall 1 - Sep 5, Summer 5 2023 July 10, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21, Fall 2 2023 Sep 17 [ 82, 174, 175, 176, 177, 178 ] |
| Rank | Ranked higher |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Molly Davis [ molly ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Assignee | Molly Davis [ molly ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Assignee | Molly Davis [ molly ] | Ann Loraine [ aloraine ] |
| Status | Post-merge Testing In Progress [ 10003 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Status | Post-merge Testing In Progress [ 10003 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Ann Loraine [ aloraine ] | Molly Davis [ molly ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Assignee | Molly Davis [ molly ] | Ann Loraine [ aloraine ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |