Details
-
Type:
Improvement
-
Status: Closed (View Workflow)
-
Priority:
Major
-
Resolution: Fixed
-
Affects Version/s: None
-
Fix Version/s: None
-
Labels:None
-
Story Points:0.25
-
Sprint:Sprint 2
Description
Visit blueberry genome and then open the attached file.
Observe: IGB displays a dialog and prints a console message with text:
-------------------------------------------------------
ERROR: File contains too many contigs; some will not be shown.
-------------------------------------------------------
This error is not helpful because it doesn't tell the user how to fix the problem.
Attachments
Issue Links
- is blocked by
-
DB-166 Refactor Symloaders to allow wrapper response object to be returned instead on only List<? extends SeqSymmetry>
-
- Open
-
Story:
IGBF-33(Improve error message when user opens Bed file with lots of sequences)Date: August 15, 2014
Intro:
When using the blueberry genome and opening this attached file ["BlueberrySSR.bed.gz" (attached to the JIRA issue)] IGB displays a dialog and prints a console message with text:
-------------------------------------------------------
ERROR: File contains too many contigs; some will not be shown.
-------------------------------------------------------
This error is not helpful because it doesn't tell the user how to fix the problem. The error message has been changed and is now ready for testing.
Story
IGBF-33was tested on:*IGB Version: 8.2.0
-(My Office Mac) Mac OS X Version 10.9.3 using JAVA RE 1.8.0_05-b13 Java HotSpot ™ 64-Bit Server
The story was tested using this workflow:
1) I opened IGB and slected the blueberry genome.
2) I opened the file "BlueberrySSR.bed.gz" (attached to the JIRA issue).
3) I checked to see if the error message had been changed to "The file contains data for too many sequences; some may not be shown. If this is a problem, please compress and index the file using tabix."
Observed:
The error message had been changed to "The file contains data for too many sequences; some may not be shown. If this is a problem, please compress and index the file using tabix."
Summary:
Story
IGBF-33was tested on my Mac. My observations were in accordance with the IGB Team's expectations. There will be more to test relating to this issue in IGBF-154.