Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
Description
See attached slide, from group meeting presentation August 15, 2023 from Muhlemann lab (Climate Resilient Crop Production lab, PI Joëlle Muhlemann).
It would be nice to investigate how or if enzymes involved flavonoid biosynthesis are differentially expressed in response to the heat stress treatment. To do that, it would help if we knew the SL4 and SL5 genes that might encode these enzymes. If we knew that, we could very easily test for over- or under-enrichment of these genes in the DE gene set or the expressed gene set in our target tissue.
Desired product: xlsx (MS Excel) spreadsheet document with columns:
- enzyme acronym (e.g., CHS, F3'5'H, FNS)
- longer name of the enzyme / enzymatic activity
- enzymatic product (e.g., naringenin-chalcone)
- gene symbol (e.g., "are" or "NA" if there's no genetic characterization, known mutants, etc)
- SL4 or SL5 gene name
- whether the previous column is from SL4 or SL5 ("SL4", "SL5" are the two possible values)
