Situation: In order to update the maven-bundle-plugin update to be compatible with JDK 11 we need to implement the new r6 declarative service component annotations in IGB.

Task: Update each module (core/plugin) in IGB to use the new annotations (see comments below). Each updated module should be its own commit.

Development Workflow:

1. Make or pick a ticket representing work on updating a module or set of modules. Assign it to yourself.
2. Branch from the latest tip of main-JDK8-r6 (as usual) to create a topic branch for this task.
3. Make code changes to new OSGI annotations.
4. Delete the .m2 folder
5. Delete the .igb folder (appData/igb folder on Windows).
6. Run mvn clean install (Do not skip tests).
   1. If any test fails, do not commit changes to any branch. Instead, (1) create a new ticket documenting the error and (2) discard the changes on your local system. Later either you or someone else will attempt investigate.
7. Start IGB, check log/standard output for any warnings/errors.
   1. If there are relevant warnings/errors make a new ticket, do not commit changes to branch. (See 6.)
8. Check the Felix Web Console in your browser (link).
   1. If any bundles are listed as fragments/installed then make a new ticket, do not commit changes to branch. (See 6.)
9. Click on the Arabidopsis genome.
10. Test the individual module functionality. See "smoke testing documentation" for how to test a module.
    1. If unclear as to how to test module functionality, ask Dr. Loraine.
    2. If module functionality appears to be broken, make a new ticket, do not commit changes to branch. (See 6.)
11. Reset preferences to default; doing this will quit IGB.
12. Commit change for that specific module to your topic branch. Format your commit message following this example: Update annotations for Plugin - Graph Tab. Each module should be modified in a single commit.
13. Push branch to your fork.
14. Mark the module as completed below.

Git:
Branch: https://bitbucket.org/lorainelab/integrated-genome-browser/commits/branch/main-JDK8-r6
Create a pull request from your branch to main-JDK8-r6

Reference:
Smoke testing documentation: https://wiki.bioviz.org/confluence/display/ITD/How+to+test+-+read+this+first