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  1. IGB
  2. IGBF-3414

Investigate: Update Core/IGB error

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          Description

          Updating core IGB bundle has thrown error such as:

          Bundle org.lorainelab.igb:igb:bundle:9.1.12 : In component class com.affymetrix.igb.prefs.IgbPreferencesLoadingOrchestrator, reference IgbPreferencesService is dynamic but has no unbind method.

          org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.felix:maven-bundle-plugin:3.5.1:bundle (default-bundle) on project igb: Error(s) found in bundle configuration

          Need to update each Java class one by one to see what is causing these errors.

          Note: For IGB bundle to build Genometry annotations need to be updated as well

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              Task - A task that needs to be done. IGBF-3413 Investigate: Update Core/Genometry error

              • Major - Major loss of function.
              • Closed

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                karthik Karthik Raveendran added a comment - - edited

                Progress of annotation changes in each Core/IGB subdirectory and preliminary test status:
                com.affymetrix.igb:

                • action - Completed
                • colorproviders - Completed
                • general - Completed
                • glyph - Completed
                • graphTypes - Completed
                • prefs - Completed
                • services.registry - Completed
                • shared - Completed
                • stylesheet - Completed
                • tiers - Completed
                • util - Completed
                • view - Completed
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                karthik Karthik Raveendran added a comment - - edited Progress of annotation changes in each Core/IGB subdirectory and preliminary test status: com.affymetrix.igb: action - Completed colorproviders - Completed general - Completed glyph - Completed graphTypes - Completed prefs - Completed services.registry - Completed shared - Completed stylesheet - Completed tiers - Completed util - Completed view - Completed
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                karthik Karthik Raveendran added a comment - - edited

                Changes in this modules is made in two commits: See commit in branch IGBF-3414

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                karthik Karthik Raveendran added a comment - - edited Changes in this modules is made in two commits: See commit in branch IGBF-3414
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                karthik Karthik Raveendran added a comment - - edited

                PR Submitted . I had to merge IGBF-3413 with this branch because they are dependent on each other to work.

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                karthik Karthik Raveendran added a comment - - edited PR Submitted . I had to merge IGBF-3413 with this branch because they are dependent on each other to work.
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                ann.loraine Ann Loraine added a comment -

                PR is merged.

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                ann.loraine Ann Loraine added a comment - PR is merged.
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                nfreese Nowlan Freese added a comment - - edited

                Built the main-JDK8-r6 branch with tests - everything built/tested successfully.
                Used installer for main-JDK8-r6 - IGB installed without any issues on macOS 13.5.1
                Ran using both main-JDK8-r6 jar file and through installer, no issues in log, IGB appeared to be working correctly.
                All bundles were listed as Active in the felix web console.

                Closing ticket.

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                nfreese Nowlan Freese added a comment - - edited Built the main-JDK8-r6 branch with tests - everything built/tested successfully. Used installer for main-JDK8-r6 - IGB installed without any issues on macOS 13.5.1 Ran using both main-JDK8-r6 jar file and through installer, no issues in log, IGB appeared to be working correctly. All bundles were listed as Active in the felix web console. Closing ticket.

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                  • Assignee:
                    karthik Karthik Raveendran
                    Reporter:
                    karthik Karthik Raveendran
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                      Updated:
                      Resolved: