Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Sprint:Summer 7 2023 Aug 7, Summer 8 2023 Aug 21
Description
Muday Lab expressed preference for referring the over-expression lines as "VF36-T3" instead of what we were calling them.
For this task, confirm with Gloria that this is they want.
Then, modify the sample titles in the SRA to use the new naming system.
Also, modify our plot-generation code to use the new naming scheme.
Focus on the plots that Muday would like to include in the paper.
If a plot is not included in the paper, we don't need to change it, probably.
Attachments
Issue Links
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2993 [ 21429 ] |
| Sprint | Summer 7 2023 Aug 7 [ 176 ] | Summer 7 2023 Aug 7, Summer 8 2023 Aug 21 [ 176, 177 ] |
| Rank | Ranked higher |
| Sprint | Summer 7 2023 Aug 7, Summer 8 2023 Aug 21 [ 176, 177 ] | Testing 2 : 4 Nov - 15 Nov, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21 [ 82, 176, 177 ] |
| Rank | Ranked higher |
| Sprint | Fall 1 - Sep 5, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21 [ 82, 176, 177 ] | Summer 7 2023 Aug 7, Summer 8 2023 Aug 21, Fall 2 2023 Sep 17 [ 176, 177, 178 ] |
| Summary | Renaming of Samples for Muday | Investigate: Improve sample titles for Muday time course data set |
| Description |
Gloria expressed a need to change a few of the sample names in the newly submitted SRA archive.
Rob will send Gloria the metadata sheet to find out which names will be changed. These are what we have calling OX3. During one of the meetings, the group decided upon a slightly different naming convention. No action needed until we hear back from Gloria. |
Gloria expressed a need to change a few of the sample names: the samples we've been calling "OX3". During one of the meetings, the group decided upon a slightly different naming convention.
Rob will send Gloria the metadata sheet to find out which names will be changed. It's possible we do not need to do this. No action needed until we hear back from Gloria. |
| Sprint | Summer 7 2023 Aug 7, Summer 8 2023 Aug 21, Fall 2 2023 Sep 17 [ 176, 177, 178 ] | Summer 7 2023 Aug 7, Summer 8 2023 Aug 21 [ 176, 177 ] |
| Assignee | Robert Reid [ robertreid ] |
| Description |
Gloria expressed a need to change a few of the sample names: the samples we've been calling "OX3". During one of the meetings, the group decided upon a slightly different naming convention.
Rob will send Gloria the metadata sheet to find out which names will be changed. It's possible we do not need to do this. No action needed until we hear back from Gloria. |
Gloria expressed a need to change a few of the sample names: the samples we've been calling "OX3". During one of the meetings, the group decided upon a slightly different naming convention. We should use the name "VF36-T3" instead of "OE3".
Rob will send Gloria the metadata sheet to find out which names will be changed. It's possible we may not need to do this. |
| Summary | Investigate: Improve sample titles for Muday time course data set | Refer to the F3H over-expression line as VF36-T3 |
| Description |
Gloria expressed a need to change a few of the sample names: the samples we've been calling "OX3". During one of the meetings, the group decided upon a slightly different naming convention. We should use the name "VF36-T3" instead of "OE3".
Rob will send Gloria the metadata sheet to find out which names will be changed. It's possible we may not need to do this. |
Muday Lab prep
Gloria expressed a need to change a few of the sample names: the samples we've been calling "OX3". During one of the meetings, the group decided upon a slightly different naming convention. We should use the name "VF36-T3" instead of "OE3". Rob will send Gloria the metadata sheet to find out which names will be changed. It's possible we may not need to do this. |
| Summary | Refer to the F3H over-expression line as VF36-T3 | Investigate: Refer to the F3H over-expression line as VF36-T3 |
| Description |
Muday Lab prep
Gloria expressed a need to change a few of the sample names: the samples we've been calling "OX3". During one of the meetings, the group decided upon a slightly different naming convention. We should use the name "VF36-T3" instead of "OE3". Rob will send Gloria the metadata sheet to find out which names will be changed. It's possible we may not need to do this. |
Muday Lab expressed preference for referring the over-expression lines as "VF36-T3" instead of what we were calling them.
For this task, confirm with Gloria that this is they want. Then, modify the sample titles in the SRA to use the new naming system. Also, modify our plot-generation code to use the new naming scheme. Focus on the plots that Muday would like to include in the paper. If a plot is not included in the paper, we don't need to change it, probably. |
| Summary | Investigate: Refer to the F3H over-expression line as VF36-T3 | Refer to the F3H over-expression line as VF36-T3 |
| Summary | Refer to the F3H over-expression line as VF36-T3 | Refer to the F3H over-expression line as VF36-T3 instead of OX3 or OE3 |
| Sprint | Summer 7 2023 Aug 7, Summer 8 2023 Aug 21 [ 176, 177 ] | Summer 7 2023 Aug 7, Summer 8 2023 Aug 21, Fall 2 2023 Sep 17 [ 176, 177, 178 ] |
| Rank | Ranked lower |
| Sprint | Summer 7 2023 Aug 7, Summer 8 2023 Aug 21, Fall 2 2023 Sep 17 [ 176, 177, 178 ] | Summer 7 2023 Aug 7, Summer 8 2023 Aug 21 [ 176, 177 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
We decided not to do this because Muday lab no longer viewed it as a priority.