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  1. IGB
  2. IGBF-3417

Investigate: Update mi-Bundle to work with main-JDK8-r6

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None

      Description

      issue: When mi-bundle app is installed after any of the genomes is selected and when the home button is clicked, it is unresponsive and the following error appears in log:

      Exception

      INFO: Species: Homo sapiens / 9606
      Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
      at it.iit.genomics.cru.igb.bundles.mi.view.SearchPanel$18.groupSelectionChanged(SearchPanel.java:685)
      at com.affymetrix.genometry.GenometryModel.fireGroupSelectionEvent(GenometryModel.java:161)
      at com.affymetrix.genometry.GenometryModel.setSelectedGenomeVersion(GenometryModel.java:147)
      at com.affymetrix.igb.action.HomeAction.actionPerformed(HomeAction.java:27)
      at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
      at com.affymetrix.igb.view.IGBToolBar$JRPButtonTLP.fireActionPerformed(IGBToolBar.java:314)
      at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
      at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
      at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
      at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
      at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
      at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
      at java.awt.Component.processMouseEvent(Component.java:6539)
      at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
      at java.awt.Component.processEvent(Component.java:6304)
      at java.awt.Container.processEvent(Container.java:2239)
      at java.awt.Component.dispatchEventImpl(Component.java:4889)
      at java.awt.Container.dispatchEventImpl(Container.java:2297)
      at java.awt.Component.dispatchEvent(Component.java:4711)
      at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904)
      at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535)
      at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476)
      at java.awt.Container.dispatchEventImpl(Container.java:2283)
      at java.awt.Window.dispatchEventImpl(Window.java:2746)
      at java.awt.Component.dispatchEvent(Component.java:4711)
      at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
      at java.awt.EventQueue.access$500(EventQueue.java:97)
      at java.awt.EventQueue$3.run(EventQueue.java:709)
      at java.awt.EventQueue$3.run(EventQueue.java:703)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
      at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
      at java.awt.EventQueue$4.run(EventQueue.java:733)
      at java.awt.EventQueue$4.run(EventQueue.java:731)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
      at java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
      at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
      at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
      at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
      at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
      at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
      at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

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          Issue Links

            Activity

            kgopu Kaushik Gopu created issue -
            kgopu Kaushik Gopu made changes -
            Field Original Value New Value
            Link This issue is blocked by IGBF-3379 [ IGBF-3379 ]
            kgopu Kaushik Gopu made changes -
            Description *issue: * When mi-bundle app is installed after any of the genomes is selected and when the home button is clicked, it is unresponsive and the following error appears in log:

            {panel:title=My title}
            INFO: Species: Homo sapiens / 9606
            Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
            at it.iit.genomics.cru.igb.bundles.mi.view.SearchPanel$18.groupSelectionChanged(SearchPanel.java:685)
            at com.affymetrix.genometry.GenometryModel.fireGroupSelectionEvent(GenometryModel.java:161)
            at com.affymetrix.genometry.GenometryModel.setSelectedGenomeVersion(GenometryModel.java:147)
            at com.affymetrix.igb.action.HomeAction.actionPerformed(HomeAction.java:27)
            at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
            at com.affymetrix.igb.view.IGBToolBar$JRPButtonTLP.fireActionPerformed(IGBToolBar.java:314)
            at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
            at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
            at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
            at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
            at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
            at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
            at java.awt.Component.processMouseEvent(Component.java:6539)
            at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
            at java.awt.Component.processEvent(Component.java:6304)
            at java.awt.Container.processEvent(Container.java:2239)
            at java.awt.Component.dispatchEventImpl(Component.java:4889)
            at java.awt.Container.dispatchEventImpl(Container.java:2297)
            at java.awt.Component.dispatchEvent(Component.java:4711)
            at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904)
            at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535)
            at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476)
            at java.awt.Container.dispatchEventImpl(Container.java:2283)
            at java.awt.Window.dispatchEventImpl(Window.java:2746)
            at java.awt.Component.dispatchEvent(Component.java:4711)
            at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
            at java.awt.EventQueue.access$500(EventQueue.java:97)
            at java.awt.EventQueue$3.run(EventQueue.java:709)
            at java.awt.EventQueue$3.run(EventQueue.java:703)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
            at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
            at java.awt.EventQueue$4.run(EventQueue.java:733)
            at java.awt.EventQueue$4.run(EventQueue.java:731)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
            at java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
            at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
            at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
            at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
            at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
            {panel}
            *issue: * When mi-bundle app is installed after any of the genomes is selected and when the home button is clicked, it is unresponsive and the following error appears in log:

            {panel:title=Exception}
            INFO: Species: Homo sapiens / 9606
            Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
            at it.iit.genomics.cru.igb.bundles.mi.view.SearchPanel$18.groupSelectionChanged(SearchPanel.java:685)
            at com.affymetrix.genometry.GenometryModel.fireGroupSelectionEvent(GenometryModel.java:161)
            at com.affymetrix.genometry.GenometryModel.setSelectedGenomeVersion(GenometryModel.java:147)
            at com.affymetrix.igb.action.HomeAction.actionPerformed(HomeAction.java:27)
            at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
            at com.affymetrix.igb.view.IGBToolBar$JRPButtonTLP.fireActionPerformed(IGBToolBar.java:314)
            at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
            at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
            at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
            at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
            at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
            at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
            at java.awt.Component.processMouseEvent(Component.java:6539)
            at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
            at java.awt.Component.processEvent(Component.java:6304)
            at java.awt.Container.processEvent(Container.java:2239)
            at java.awt.Component.dispatchEventImpl(Component.java:4889)
            at java.awt.Container.dispatchEventImpl(Container.java:2297)
            at java.awt.Component.dispatchEvent(Component.java:4711)
            at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904)
            at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535)
            at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476)
            at java.awt.Container.dispatchEventImpl(Container.java:2283)
            at java.awt.Window.dispatchEventImpl(Window.java:2746)
            at java.awt.Component.dispatchEvent(Component.java:4711)
            at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
            at java.awt.EventQueue.access$500(EventQueue.java:97)
            at java.awt.EventQueue$3.run(EventQueue.java:709)
            at java.awt.EventQueue$3.run(EventQueue.java:703)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
            at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
            at java.awt.EventQueue$4.run(EventQueue.java:733)
            at java.awt.EventQueue$4.run(EventQueue.java:731)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
            at java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
            at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
            at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
            at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
            at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
            {panel}
            kgopu Kaushik Gopu made changes -
            Summary Investigate "AWT-EventQueue-0" java.lang.NullPointerException in mi-bundle plugin. Investigate "AWT-EventQueue-0" java.lang.NullPointerException occurring due to mi-bundle.
            kgopu Kaushik Gopu made changes -
            Description *issue: * When mi-bundle app is installed after any of the genomes is selected and when the home button is clicked, it is unresponsive and the following error appears in log:

            {panel:title=Exception}
            INFO: Species: Homo sapiens / 9606
            Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
            at it.iit.genomics.cru.igb.bundles.mi.view.SearchPanel$18.groupSelectionChanged(SearchPanel.java:685)
            at com.affymetrix.genometry.GenometryModel.fireGroupSelectionEvent(GenometryModel.java:161)
            at com.affymetrix.genometry.GenometryModel.setSelectedGenomeVersion(GenometryModel.java:147)
            at com.affymetrix.igb.action.HomeAction.actionPerformed(HomeAction.java:27)
            at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
            at com.affymetrix.igb.view.IGBToolBar$JRPButtonTLP.fireActionPerformed(IGBToolBar.java:314)
            at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
            at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
            at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
            at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
            at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
            at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
            at java.awt.Component.processMouseEvent(Component.java:6539)
            at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
            at java.awt.Component.processEvent(Component.java:6304)
            at java.awt.Container.processEvent(Container.java:2239)
            at java.awt.Component.dispatchEventImpl(Component.java:4889)
            at java.awt.Container.dispatchEventImpl(Container.java:2297)
            at java.awt.Component.dispatchEvent(Component.java:4711)
            at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904)
            at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535)
            at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476)
            at java.awt.Container.dispatchEventImpl(Container.java:2283)
            at java.awt.Window.dispatchEventImpl(Window.java:2746)
            at java.awt.Component.dispatchEvent(Component.java:4711)
            at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
            at java.awt.EventQueue.access$500(EventQueue.java:97)
            at java.awt.EventQueue$3.run(EventQueue.java:709)
            at java.awt.EventQueue$3.run(EventQueue.java:703)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
            at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
            at java.awt.EventQueue$4.run(EventQueue.java:733)
            at java.awt.EventQueue$4.run(EventQueue.java:731)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
            at java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
            at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
            at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
            at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
            at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
            {panel}
            *issue:* When mi-bundle app is installed after any of the genomes is selected and when the home button is clicked, it is unresponsive and the following error appears in log:

            {panel:title=Exception}
            INFO: Species: Homo sapiens / 9606
            Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
            at it.iit.genomics.cru.igb.bundles.mi.view.SearchPanel$18.groupSelectionChanged(SearchPanel.java:685)
            at com.affymetrix.genometry.GenometryModel.fireGroupSelectionEvent(GenometryModel.java:161)
            at com.affymetrix.genometry.GenometryModel.setSelectedGenomeVersion(GenometryModel.java:147)
            at com.affymetrix.igb.action.HomeAction.actionPerformed(HomeAction.java:27)
            at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
            at com.affymetrix.igb.view.IGBToolBar$JRPButtonTLP.fireActionPerformed(IGBToolBar.java:314)
            at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
            at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
            at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
            at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
            at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
            at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
            at java.awt.Component.processMouseEvent(Component.java:6539)
            at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
            at java.awt.Component.processEvent(Component.java:6304)
            at java.awt.Container.processEvent(Container.java:2239)
            at java.awt.Component.dispatchEventImpl(Component.java:4889)
            at java.awt.Container.dispatchEventImpl(Container.java:2297)
            at java.awt.Component.dispatchEvent(Component.java:4711)
            at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904)
            at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535)
            at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476)
            at java.awt.Container.dispatchEventImpl(Container.java:2283)
            at java.awt.Window.dispatchEventImpl(Window.java:2746)
            at java.awt.Component.dispatchEvent(Component.java:4711)
            at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
            at java.awt.EventQueue.access$500(EventQueue.java:97)
            at java.awt.EventQueue$3.run(EventQueue.java:709)
            at java.awt.EventQueue$3.run(EventQueue.java:703)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
            at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
            at java.awt.EventQueue$4.run(EventQueue.java:733)
            at java.awt.EventQueue$4.run(EventQueue.java:731)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
            at java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
            at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
            at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
            at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
            at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
            {panel}
            kgopu Kaushik Gopu made changes -
            Epic Link IGBF-3411 [ 22434 ]
            kgopu Kaushik Gopu made changes -
            Story Points 5
            Sprint Summer 8 2023 Aug 21 [ 177 ]
            Assignee Ann Loraine [ aloraine ] Kaushik Gopu [ kgopu ]
            kgopu Kaushik Gopu made changes -
            Summary Investigate "AWT-EventQueue-0" java.lang.NullPointerException occurring due to mi-bundle. "Investigate: Update mi-Bundle to work with main-JDK8-r6
            kgopu Kaushik Gopu made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            kgopu Kaushik Gopu made changes -
            Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
            kgopu Kaushik Gopu made changes -
            Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
            nfreese Nowlan Freese made changes -
            Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
            nfreese Nowlan Freese made changes -
            Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
            nfreese Nowlan Freese made changes -
            Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
            nfreese Nowlan Freese made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            nfreese Nowlan Freese made changes -
            Status In Progress [ 3 ] To-Do [ 10305 ]
            nfreese Nowlan Freese made changes -
            Assignee Kaushik Gopu [ kgopu ]
            ann.loraine Ann Loraine made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            ann.loraine Ann Loraine made changes -
            Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
            ann.loraine Ann Loraine made changes -
            Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
            ann.loraine Ann Loraine made changes -
            Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
            ann.loraine Ann Loraine made changes -
            Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
            ann.loraine Ann Loraine made changes -
            Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
            ann.loraine Ann Loraine made changes -
            Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
            ann.loraine Ann Loraine made changes -
            Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
            ann.loraine Ann Loraine made changes -
            Resolution Done [ 10000 ]
            Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
            ann.loraine Ann Loraine made changes -
            Assignee Kaushik Gopu [ kgopu ]
            ann.loraine Ann Loraine made changes -
            Summary "Investigate: Update mi-Bundle to work with main-JDK8-r6 Investigate: Update mi-Bundle to work with main-JDK8-r6

              People

              • Assignee:
                kgopu Kaushik Gopu
                Reporter:
                kgopu Kaushik Gopu
              • Votes:
                0 Vote for this issue
                Watchers:
                2 Start watching this issue

                Dates

                • Created:
                  Updated:
                  Resolved: