[IGBF-3430] Remove osgi compendium from the IGB Project - JIRA UNCC

Details

Type: Task
Status: Closed (View Workflow)
Priority: Major
Resolution: Done
Affects Version/s: None
Fix Version/s: 10.0.0 Major Release
Labels:
None

Story Points:
2
Epic Link:
Implement r6 Annotations in IGB
Sprint:
Fall 1 - Sep 5

Description

Now that all declarative services in IGB has been migrated to osgi.annotations as of ~~IGBF-3414~~, the next step to migrate the project J11 requires compendium to be removed.

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Karthik Raveendran added a comment - 06/Sep/23 10:04 AM - edited

After removing cmpn dependencies from the project IGB seems to be running fine, except for one error for felix.htttp.bundle and this happens when cmpn is removed from main/pom.xml.

10:21:12.486 [main] ERROR com.affymetrix.main.OSGiHandler - Unable to resolve org.apache.felix.http.bundle [58](R 58.0): missing requirement [org.apache.felix.http.bundle [58](R 58.0)] osgi.wiring.package; (&(osgi.wiring.package=org.osgi.service.log)(version>=1.3.0)(!(version>=2.0.0))) Unresolved requirements: [[org.apache.felix.http.bundle [58](R 58.0)] osgi.wiring.package; (&(osgi.wiring.package=org.osgi.service.log)(version>=1.3.0)(!(version>=2.0.0)))]
org.osgi.framework.BundleException: Unable to resolve org.apache.felix.http.bundle [58](R 58.0): missing requirement [org.apache.felix.http.bundle [58](R 58.0)] osgi.wiring.package; (&(osgi.wiring.package=org.osgi.service.log)(version>=1.3.0)(!(version>=2.0.0))) Unresolved requirements: [[org.apache.felix.http.bundle [58](R 58.0)] osgi.wiring.package; (&(osgi.wiring.package=org.osgi.service.log)(version>=1.3.0)(!(version>=2.0.0)))]
        at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:4368)
        at org.apache.felix.framework.Felix.startBundle(Felix.java:2281)
        at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:998)
        at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:984)
        at com.affymetrix.main.OSGiHandler.loadBundles(OSGiHandler.java:83)
        at com.affymetrix.main.OSGiHandler.startOSGi(OSGiHandler.java:63)
        at com.affymetrix.main.Main.main(Main.java:30)
10:21:12.486 [main] ERROR com.affymetrix.main.OSGiHandler - Error starting bundle org.apache.felix.http.bundle:3.0.0

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Karthik Raveendran added a comment - 06/Sep/23 10:04 AM - edited After removing cmpn dependencies from the project IGB seems to be running fine, except for one error for felix.htttp.bundle and this happens when cmpn is removed from main/pom.xml. 10:21:12.486 [main] ERROR com.affymetrix.main.OSGiHandler - Unable to resolve org.apache.felix.http.bundle [58](R 58.0): missing requirement [org.apache.felix.http.bundle [58](R 58.0)] osgi.wiring. package ; (&(osgi.wiring. package =org.osgi.service.log)(version>=1.3.0)(!(version>=2.0.0))) Unresolved requirements: [[org.apache.felix.http.bundle [58](R 58.0)] osgi.wiring. package ; (&(osgi.wiring. package =org.osgi.service.log)(version>=1.3.0)(!(version>=2.0.0)))] org.osgi.framework.BundleException: Unable to resolve org.apache.felix.http.bundle [58](R 58.0): missing requirement [org.apache.felix.http.bundle [58](R 58.0)] osgi.wiring. package ; (&(osgi.wiring. package =org.osgi.service.log)(version>=1.3.0)(!(version>=2.0.0))) Unresolved requirements: [[org.apache.felix.http.bundle [58](R 58.0)] osgi.wiring. package ; (&(osgi.wiring. package =org.osgi.service.log)(version>=1.3.0)(!(version>=2.0.0)))] at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:4368) at org.apache.felix.framework.Felix.startBundle(Felix.java:2281) at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:998) at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:984) at com.affymetrix.main.OSGiHandler.loadBundles(OSGiHandler.java:83) at com.affymetrix.main.OSGiHandler.startOSGi(OSGiHandler.java:63) at com.affymetrix.main.Main.main(Main.java:30) 10:21:12.486 [main] ERROR com.affymetrix.main.OSGiHandler - Error starting bundle org.apache.felix.http.bundle:3.0.0

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Nowlan Freese added a comment - 06/Sep/23 3:55 PM

Branch: https://bitbucket.org/nfreese/nowlanfork-igb/branch/IGBF-3430

Adding org.osgi.service.log resolved the missing requirement on my system after removing osgi.cmpn.

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Nowlan Freese added a comment - 06/Sep/23 3:55 PM Branch: https://bitbucket.org/nfreese/nowlanfork-igb/branch/IGBF-3430 Adding org.osgi.service.log resolved the missing requirement on my system after removing osgi.cmpn.

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Karthik Raveendran added a comment - 07/Sep/23 10:07 AM

I have included the all the changes in cmpn. See commit

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Karthik Raveendran added a comment - 07/Sep/23 10:07 AM I have included the all the changes in cmpn. See commit

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Nowlan Freese added a comment - 08/Sep/23 2:52 PM

Tested on Mac through terminal, Netbeans debugger, and installer. Everything is working correctly and all bundles are active.

Pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/947

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Nowlan Freese added a comment - 08/Sep/23 2:52 PM Tested on Mac through terminal, Netbeans debugger, and installer. Everything is working correctly and all bundles are active. Pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/947

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Nowlan Freese added a comment - 15/Sep/23 9:59 AM

Installers failed to build due to an issue with DAS (will be addressed in ~~IGBF-3441~~). Closing the ticket for now as everything seems to be working. Additional testing will take place with ~~IGBF-3431~~.

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Nowlan Freese added a comment - 15/Sep/23 9:59 AM Installers failed to build due to an issue with DAS (will be addressed in IGBF-3441 ). Closing the ticket for now as everything seems to be working. Additional testing will take place with IGBF-3431 .

People

Assignee:

Karthik Raveendran

Reporter:

Karthik Raveendran

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Watchers:

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Dates

Created:

05/Sep/23 10:21 AM

Updated:

05/Feb/24 12:46 PM

Resolved:

15/Sep/23 9:59 AM