[IGBF-3430] Remove osgi compendium from the IGB Project - JIRA UNCC

Details

Type: Task
Status: Closed (View Workflow)
Priority: Major
Resolution: Done
Affects Version/s: None
Fix Version/s: 10.0.0 Major Release
Labels:
None

Story Points:
2
Epic Link:
Implement r6 Annotations in IGB
Sprint:
Fall 1 - Sep 5

Description

Now that all declarative services in IGB has been migrated to osgi.annotations as of ~~IGBF-3414~~, the next step to migrate the project J11 requires compendium to be removed.

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Karthik Raveendran created issue - 05/Sep/23 10:21 AM

Karthik Raveendran made changes - 05/Sep/23 10:21 AM

Field	Original Value	New Value
Epic Link		~~IGBF-3411~~ [ 22434 ]

Karthik Raveendran made changes - 05/Sep/23 10:21 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Karthik Raveendran made changes - 05/Sep/23 10:23 AM

Description

Now that all declarative services in IGB has been migrated to osgi.annotations, the next step to migrate the project J11 requires compendium to be removed.

Now that all declarative services in IGB has been migrated to osgi.annotations as of ~~IGBF-3414~~, the next step to migrate the project J11 requires compendium to be removed.

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Karthik Raveendran added a comment - 06/Sep/23 10:04 AM - edited

After removing cmpn dependencies from the project IGB seems to be running fine, except for one error for felix.htttp.bundle and this happens when cmpn is removed from main/pom.xml.

10:21:12.486 [main] ERROR com.affymetrix.main.OSGiHandler - Unable to resolve org.apache.felix.http.bundle [58](R 58.0): missing requirement [org.apache.felix.http.bundle [58](R 58.0)] osgi.wiring.package; (&(osgi.wiring.package=org.osgi.service.log)(version>=1.3.0)(!(version>=2.0.0))) Unresolved requirements: [[org.apache.felix.http.bundle [58](R 58.0)] osgi.wiring.package; (&(osgi.wiring.package=org.osgi.service.log)(version>=1.3.0)(!(version>=2.0.0)))]
org.osgi.framework.BundleException: Unable to resolve org.apache.felix.http.bundle [58](R 58.0): missing requirement [org.apache.felix.http.bundle [58](R 58.0)] osgi.wiring.package; (&(osgi.wiring.package=org.osgi.service.log)(version>=1.3.0)(!(version>=2.0.0))) Unresolved requirements: [[org.apache.felix.http.bundle [58](R 58.0)] osgi.wiring.package; (&(osgi.wiring.package=org.osgi.service.log)(version>=1.3.0)(!(version>=2.0.0)))]
        at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:4368)
        at org.apache.felix.framework.Felix.startBundle(Felix.java:2281)
        at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:998)
        at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:984)
        at com.affymetrix.main.OSGiHandler.loadBundles(OSGiHandler.java:83)
        at com.affymetrix.main.OSGiHandler.startOSGi(OSGiHandler.java:63)
        at com.affymetrix.main.Main.main(Main.java:30)
10:21:12.486 [main] ERROR com.affymetrix.main.OSGiHandler - Error starting bundle org.apache.felix.http.bundle:3.0.0

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Karthik Raveendran added a comment - 06/Sep/23 10:04 AM - edited After removing cmpn dependencies from the project IGB seems to be running fine, except for one error for felix.htttp.bundle and this happens when cmpn is removed from main/pom.xml. 10:21:12.486 [main] ERROR com.affymetrix.main.OSGiHandler - Unable to resolve org.apache.felix.http.bundle [58](R 58.0): missing requirement [org.apache.felix.http.bundle [58](R 58.0)] osgi.wiring. package ; (&(osgi.wiring. package =org.osgi.service.log)(version>=1.3.0)(!(version>=2.0.0))) Unresolved requirements: [[org.apache.felix.http.bundle [58](R 58.0)] osgi.wiring. package ; (&(osgi.wiring. package =org.osgi.service.log)(version>=1.3.0)(!(version>=2.0.0)))] org.osgi.framework.BundleException: Unable to resolve org.apache.felix.http.bundle [58](R 58.0): missing requirement [org.apache.felix.http.bundle [58](R 58.0)] osgi.wiring. package ; (&(osgi.wiring. package =org.osgi.service.log)(version>=1.3.0)(!(version>=2.0.0))) Unresolved requirements: [[org.apache.felix.http.bundle [58](R 58.0)] osgi.wiring. package ; (&(osgi.wiring. package =org.osgi.service.log)(version>=1.3.0)(!(version>=2.0.0)))] at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:4368) at org.apache.felix.framework.Felix.startBundle(Felix.java:2281) at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:998) at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:984) at com.affymetrix.main.OSGiHandler.loadBundles(OSGiHandler.java:83) at com.affymetrix.main.OSGiHandler.startOSGi(OSGiHandler.java:63) at com.affymetrix.main.Main.main(Main.java:30) 10:21:12.486 [main] ERROR com.affymetrix.main.OSGiHandler - Error starting bundle org.apache.felix.http.bundle:3.0.0

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Nowlan Freese added a comment - 06/Sep/23 3:55 PM

Branch: https://bitbucket.org/nfreese/nowlanfork-igb/branch/IGBF-3430

Adding org.osgi.service.log resolved the missing requirement on my system after removing osgi.cmpn.

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Nowlan Freese added a comment - 06/Sep/23 3:55 PM Branch: https://bitbucket.org/nfreese/nowlanfork-igb/branch/IGBF-3430 Adding org.osgi.service.log resolved the missing requirement on my system after removing osgi.cmpn.

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Karthik Raveendran added a comment - 07/Sep/23 10:07 AM

I have included the all the changes in cmpn. See commit

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Karthik Raveendran added a comment - 07/Sep/23 10:07 AM I have included the all the changes in cmpn. See commit

Karthik Raveendran made changes - 07/Sep/23 10:08 AM

Assignee

Karthik Raveendran [ karthik ]

Karthik Raveendran made changes - 07/Sep/23 10:08 AM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

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Nowlan Freese added a comment - 08/Sep/23 2:52 PM

Tested on Mac through terminal, Netbeans debugger, and installer. Everything is working correctly and all bundles are active.

Pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/947

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Nowlan Freese added a comment - 08/Sep/23 2:52 PM Tested on Mac through terminal, Netbeans debugger, and installer. Everything is working correctly and all bundles are active. Pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/947

Nowlan Freese made changes - 08/Sep/23 2:52 PM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Nowlan Freese made changes - 08/Sep/23 2:52 PM

Status

First Level Review in Progress [ 10301 ]

Ready for Pull Request [ 10304 ]

Nowlan Freese made changes - 11/Sep/23 8:51 AM

Status

Ready for Pull Request [ 10304 ]

Pull Request Submitted [ 10101 ]

Karthik Raveendran made changes - 13/Sep/23 10:02 AM

Assignee

Karthik Raveendran [ karthik ]

Nowlan Freese made changes - 13/Sep/23 10:06 AM

Assignee

Karthik Raveendran [ karthik ]

Ann Loraine made changes - 13/Sep/23 11:32 AM

Assignee

Ann Loraine [ aloraine ]

Ann Loraine made changes - 13/Sep/23 11:32 AM

Status

Pull Request Submitted [ 10101 ]

Reviewing Pull Request [ 10303 ]

Nowlan Freese made changes - 14/Sep/23 10:30 AM

Status

Reviewing Pull Request [ 10303 ]

Merged Needs Testing [ 10002 ]

Nowlan Freese made changes - 14/Sep/23 10:30 AM

Assignee

Ann Loraine [ aloraine ]

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Nowlan Freese added a comment - 15/Sep/23 9:59 AM

Installers failed to build due to an issue with DAS (will be addressed in ~~IGBF-3441~~). Closing the ticket for now as everything seems to be working. Additional testing will take place with ~~IGBF-3431~~.

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Nowlan Freese added a comment - 15/Sep/23 9:59 AM Installers failed to build due to an issue with DAS (will be addressed in IGBF-3441 ). Closing the ticket for now as everything seems to be working. Additional testing will take place with IGBF-3431 .

Nowlan Freese made changes - 15/Sep/23 9:59 AM

Assignee

Karthik Raveendran [ karthik ]

Nowlan Freese made changes - 15/Sep/23 9:59 AM

Status

Merged Needs Testing [ 10002 ]

Post-merge Testing In Progress [ 10003 ]

Nowlan Freese made changes - 15/Sep/23 9:59 AM

Resolution		Done [ 10000 ]
Status	Post-merge Testing In Progress [ 10003 ]	Closed [ 6 ]

Paige Kulzer made changes - 05/Feb/24 12:46 PM

Fix Version/s

10.0.0 Major Release [ 10900 ]

People

Assignee:

Karthik Raveendran

Reporter:

Karthik Raveendran

Votes:

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Watchers:

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Dates

Created:

05/Sep/23 10:21 AM

Updated:

05/Feb/24 12:46 PM

Resolved:

15/Sep/23 9:59 AM