Details
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Type:
Task
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Status: To-Do (View Workflow)
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:3
Description
The "hotpollen" IGB Quickload site at https://data.bioviz.org/hotpollen has several folders with data in them, but not a lot of description. We need to document this site a bit better on the site itself in preparation for submitting papers.
For this task, add "HEADER.md" files that document:
- What the SL5 June 2022 and SL4 Sep 2019 genomes are - use text from IGB Quickload main; update that text if needed; this will be for folders: https://data.bioviz.org/hotpollen/S_lycopersicum_Sep_2019/ and https://data.bioviz.org/hotpollen/S_lycopersicum_Jun_2022/. See quickload "main" for the text that's needed, and also the subversion repository
- What the flavonoid RNA-Seq data folders contain, such as: https://data.bioviz.org/hotpollen/S_lycopersicum_Jun_2022/30-605730043/ and its sister directories; this would be like text from a methods section
Make a "zip" or "tar.gz" file with the HEADER.md files organized in a way that will make it easy for the person who deploys them on-line to put them in the right places and then view them. AL is probably going to be the person to deploy it all!
For example, Ann thinks the easiest option for her would be to create a copy of the directory tree with folders needing HEADER.md files.
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-3446 [ 22548 ] |
| Description |
The "hotpollen" IGB Quickload site at https://data.bioviz.org/hotpollen has several folders with data in them, but not a lot of description. We need to document this site a bit better on the site itself in preparation for submitting papers.
For this task, add "HEADER.md" files that document: * What the SL5 June 2022 genome is - use text from IGB Quickload main; update that text if needed * What the SL4 June genome is - use text from IGB Quickload main; update that text if needed * What the flavonoid RNA-Seq data folders contain |
The "hotpollen" IGB Quickload site at https://data.bioviz.org/hotpollen has several folders with data in them, but not a lot of description. We need to document this site a bit better on the site itself in preparation for submitting papers.
For this task, add "HEADER.md" files that document: * What the SL5 June 2022 genome is - use text from IGB Quickload main; update that text if needed; this can go into: * What the SL4 June genome is - use text from IGB Quickload main; update that text if needed * What the flavonoid RNA-Seq data folders contain |
| Description |
The "hotpollen" IGB Quickload site at https://data.bioviz.org/hotpollen has several folders with data in them, but not a lot of description. We need to document this site a bit better on the site itself in preparation for submitting papers.
For this task, add "HEADER.md" files that document: * What the SL5 June 2022 genome is - use text from IGB Quickload main; update that text if needed; this can go into: * What the SL4 June genome is - use text from IGB Quickload main; update that text if needed * What the flavonoid RNA-Seq data folders contain |
The "hotpollen" IGB Quickload site at https://data.bioviz.org/hotpollen has several folders with data in them, but not a lot of description. We need to document this site a bit better on the site itself in preparation for submitting papers.
For this task, add "HEADER.md" files that document: * What the SL5 June 2022 genome is - use text from IGB Quickload main; update that text if needed; this will be for folders: https://data.bioviz.org/hotpollen/S_lycopersicum_Sep_2019/ and https://data.bioviz.org/hotpollen/S_lycopersicum_Jun_2022/. See quickload "main" for the text that's needed: https://data.bioviz.org/quickload/ * What the SL4 June genome is - use text from IGB Quickload main; update that text if needed * What the flavonoid RNA-Seq data folders contain |
| Description |
The "hotpollen" IGB Quickload site at https://data.bioviz.org/hotpollen has several folders with data in them, but not a lot of description. We need to document this site a bit better on the site itself in preparation for submitting papers.
For this task, add "HEADER.md" files that document: * What the SL5 June 2022 genome is - use text from IGB Quickload main; update that text if needed; this will be for folders: https://data.bioviz.org/hotpollen/S_lycopersicum_Sep_2019/ and https://data.bioviz.org/hotpollen/S_lycopersicum_Jun_2022/. See quickload "main" for the text that's needed: https://data.bioviz.org/quickload/ * What the SL4 June genome is - use text from IGB Quickload main; update that text if needed * What the flavonoid RNA-Seq data folders contain |
The "hotpollen" IGB Quickload site at https://data.bioviz.org/hotpollen has several folders with data in them, but not a lot of description. We need to document this site a bit better on the site itself in preparation for submitting papers.
For this task, add "HEADER.md" files that document: * What the SL5 June 2022 and SL4 Sep 2019 genomes are - use text from IGB Quickload main; update that text if needed; this will be for folders: https://data.bioviz.org/hotpollen/S_lycopersicum_Sep_2019/ and https://data.bioviz.org/hotpollen/S_lycopersicum_Jun_2022/. See quickload "main" for the text that's needed, and also the subversion repository * What the flavonoid RNA-Seq data folders contain Make a "zip" or "tar.gz" file with the HEADER.md files organized in a way that will make it easy for the person who deploys them on-line to put them in the right places and then view them. AL is probably going to be the person to deploy it all! For example, Ann thinks the easiest option for her would be to create a copy of the directory tree with folders needing HEADER.md files. |
| Description |
The "hotpollen" IGB Quickload site at https://data.bioviz.org/hotpollen has several folders with data in them, but not a lot of description. We need to document this site a bit better on the site itself in preparation for submitting papers.
For this task, add "HEADER.md" files that document: * What the SL5 June 2022 and SL4 Sep 2019 genomes are - use text from IGB Quickload main; update that text if needed; this will be for folders: https://data.bioviz.org/hotpollen/S_lycopersicum_Sep_2019/ and https://data.bioviz.org/hotpollen/S_lycopersicum_Jun_2022/. See quickload "main" for the text that's needed, and also the subversion repository * What the flavonoid RNA-Seq data folders contain Make a "zip" or "tar.gz" file with the HEADER.md files organized in a way that will make it easy for the person who deploys them on-line to put them in the right places and then view them. AL is probably going to be the person to deploy it all! For example, Ann thinks the easiest option for her would be to create a copy of the directory tree with folders needing HEADER.md files. |
The "hotpollen" IGB Quickload site at https://data.bioviz.org/hotpollen has several folders with data in them, but not a lot of description. We need to document this site a bit better on the site itself in preparation for submitting papers.
For this task, add "HEADER.md" files that document: * What the SL5 June 2022 and SL4 Sep 2019 genomes are - use text from IGB Quickload main; update that text if needed; this will be for folders: https://data.bioviz.org/hotpollen/S_lycopersicum_Sep_2019/ and https://data.bioviz.org/hotpollen/S_lycopersicum_Jun_2022/. See quickload "main" for the text that's needed, and also the subversion repository * What the flavonoid RNA-Seq data folders contain, such as: https://data.bioviz.org/hotpollen/S_lycopersicum_Jun_2022/30-605730043/ and its sister directories Make a "zip" or "tar.gz" file with the HEADER.md files organized in a way that will make it easy for the person who deploys them on-line to put them in the right places and then view them. AL is probably going to be the person to deploy it all! For example, Ann thinks the easiest option for her would be to create a copy of the directory tree with folders needing HEADER.md files. |
| Description |
The "hotpollen" IGB Quickload site at https://data.bioviz.org/hotpollen has several folders with data in them, but not a lot of description. We need to document this site a bit better on the site itself in preparation for submitting papers.
For this task, add "HEADER.md" files that document: * What the SL5 June 2022 and SL4 Sep 2019 genomes are - use text from IGB Quickload main; update that text if needed; this will be for folders: https://data.bioviz.org/hotpollen/S_lycopersicum_Sep_2019/ and https://data.bioviz.org/hotpollen/S_lycopersicum_Jun_2022/. See quickload "main" for the text that's needed, and also the subversion repository * What the flavonoid RNA-Seq data folders contain, such as: https://data.bioviz.org/hotpollen/S_lycopersicum_Jun_2022/30-605730043/ and its sister directories Make a "zip" or "tar.gz" file with the HEADER.md files organized in a way that will make it easy for the person who deploys them on-line to put them in the right places and then view them. AL is probably going to be the person to deploy it all! For example, Ann thinks the easiest option for her would be to create a copy of the directory tree with folders needing HEADER.md files. |
The "hotpollen" IGB Quickload site at https://data.bioviz.org/hotpollen has several folders with data in them, but not a lot of description. We need to document this site a bit better on the site itself in preparation for submitting papers.
For this task, add "HEADER.md" files that document: * What the SL5 June 2022 and SL4 Sep 2019 genomes are - use text from IGB Quickload main; update that text if needed; this will be for folders: https://data.bioviz.org/hotpollen/S_lycopersicum_Sep_2019/ and https://data.bioviz.org/hotpollen/S_lycopersicum_Jun_2022/. See quickload "main" for the text that's needed, and also the subversion repository * What the flavonoid RNA-Seq data folders contain, such as: https://data.bioviz.org/hotpollen/S_lycopersicum_Jun_2022/30-605730043/ and its sister directories; this would be like text from a methods section Make a "zip" or "tar.gz" file with the HEADER.md files organized in a way that will make it easy for the person who deploys them on-line to put them in the right places and then view them. AL is probably going to be the person to deploy it all! For example, Ann thinks the easiest option for her would be to create a copy of the directory tree with folders needing HEADER.md files. |
| Sprint | Fall 6 [ 182 ] | |
| Assignee | Molly Davis [ molly ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Story Points | 0.5 | 3 |
| Sprint | Fall 6 [ 182 ] | Fall 7 [ 183 ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Sprint | Fall 7 [ 183 ] |