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  1. IGB
  2. IGBF-3450

Run nf-core/rnaseq pipeline using SL4 target genome assembly

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None

      Description

      Goal:

      Create BAM, coverage graph, and junction files for the Muday Lab time course data using SL4 genome and gene annotations as the target for alignment.

      When complete, please note the location of files created.

      Note: Don't use the renamed files. Use the original input files prior to their being renamed.

        Attachments

          Activity

          ann.loraine Ann Loraine created issue -
          ann.loraine Ann Loraine made changes -
          Field Original Value New Value
          Epic Link IGBF-3446 [ 22548 ]
          Mdavis4290 Molly Davis made changes -
          Sprint Fall 2 2023 Sep 17 [ 178 ]
          Mdavis4290 Molly Davis made changes -
          Status To-Do [ 10305 ] In Progress [ 3 ]
          ann.loraine Ann Loraine made changes -
          Description Goal:

          Create BAM, coverage graph, and junction files for the Muday Lab time course data using SL4 genome and gene annotations as the target for alignment.

          When complete, please note the location of files created.




          Goal:

          Create BAM, coverage graph, and junction files for the Muday Lab time course data using SL4 genome and gene annotations as the target for alignment.

          When complete, please note the location of files created.

          Note: Don't use the renamed files. Use the original input files prior to their being renamed.



          Mdavis4290 Molly Davis made changes -
          Assignee Molly Davis [ molly ]
          Mdavis4290 Molly Davis made changes -
          Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
          ann.loraine Ann Loraine made changes -
          Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
          ann.loraine Ann Loraine made changes -
          Assignee Ann Loraine [ aloraine ]
          ann.loraine Ann Loraine made changes -
          Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
          ann.loraine Ann Loraine made changes -
          Rank Ranked higher
          ann.loraine Ann Loraine made changes -
          Assignee Ann Loraine [ aloraine ] Molly Davis [ molly ]
          Mdavis4290 Molly Davis made changes -
          Status To-Do [ 10305 ] In Progress [ 3 ]
          Mdavis4290 Molly Davis made changes -
          Assignee Molly Davis [ molly ]
          Mdavis4290 Molly Davis made changes -
          Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
          Mdavis4290 Molly Davis made changes -
          Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
          Mdavis4290 Molly Davis made changes -
          Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
          Mdavis4290 Molly Davis made changes -
          Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
          Mdavis4290 Molly Davis made changes -
          Assignee Ann Loraine [ aloraine ]
          ann.loraine Ann Loraine made changes -
          Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
          ann.loraine Ann Loraine made changes -
          Status Reviewing Pull Request [ 10303 ] To-Do [ 10305 ]
          ann.loraine Ann Loraine made changes -
          Assignee Ann Loraine [ aloraine ] Molly Davis [ molly ]
          Mdavis4290 Molly Davis made changes -
          Assignee Molly Davis [ molly ] Ann Loraine [ aloraine ]
          Mdavis4290 Molly Davis made changes -
          Status To-Do [ 10305 ] In Progress [ 3 ]
          Mdavis4290 Molly Davis made changes -
          Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
          ann.loraine Ann Loraine made changes -
          Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
          ann.loraine Ann Loraine made changes -
          Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
          ann.loraine Ann Loraine made changes -
          Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
          ann.loraine Ann Loraine made changes -
          Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
          ann.loraine Ann Loraine made changes -
          Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
          ann.loraine Ann Loraine made changes -
          Assignee Ann Loraine [ aloraine ]
          Mdavis4290 Molly Davis made changes -
          Assignee Molly Davis [ molly ]
          Mdavis4290 Molly Davis made changes -
          Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
          Mdavis4290 Molly Davis made changes -
          Resolution Done [ 10000 ]
          Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

            People

            • Assignee:
              Mdavis4290 Molly Davis
              Reporter:
              ann.loraine Ann Loraine
            • Votes:
              0 Vote for this issue
              Watchers:
              2 Start watching this issue

              Dates

              • Created:
                Updated:
                Resolved: