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  1. IGB
  2. IGBF-3460

Make Markdown creating and summarizing temperature:genotype interaction testing

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Create a Markdown creating and summarizing temperature:genotype interaction testing.

          Please follow the same general pattern as in the other statistical analysis markdowns.

          Start with data from SL4 not SL5.

          If the output is per time, then include a column: time indicating the time point being tested.

          Code Sources:

          https://rdrr.io/bioc/DESeq2/man/results.html#:~:text=object)%24tDegreesFreedom%20.-,Value,standard%20error%20of%20the%20log2FoldChange%20.
          https://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#note-on-factor-levels

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-3463 Update readme

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3436 Compare temperature responsiveness between genotypes using DESeq2

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                ann.loraine Ann Loraine created issue -
                ann.loraine Ann Loraine made changes -
                Field Original Value New Value
                Epic Link IGBF-3446 [ 22548 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Description Create a Markdown creating and summarizing temperature:genotype interaction testing.

                Please follow the same general pattern as in are2VF36.Rmd and the other statistical analysis markdowns.

                		Create a Markdown creating and summarizing temperature:genotype interaction testing.

                Please follow the same general pattern as in the other statistical analysis markdowns.

                ann.loraine Ann Loraine made changes -
                Description Create a Markdown creating and summarizing temperature:genotype interaction testing.

                Please follow the same general pattern as in the other statistical analysis markdowns.

                		Create a Markdown creating and summarizing temperature:genotype interaction testing.

                Please follow the same general pattern as in the other statistical analysis markdowns.

                Start with data from SL4 not SL5.

                ann.loraine Ann Loraine made changes -
                Description Create a Markdown creating and summarizing temperature:genotype interaction testing.

                Please follow the same general pattern as in the other statistical analysis markdowns.

                Start with data from SL4 not SL5.

                		Create a Markdown creating and summarizing temperature:genotype interaction testing.

                Please follow the same general pattern as in the other statistical analysis markdowns.

                Start with data from SL4 not SL5.

                If the output is per time, then include a column: time indicating the time point being tested.

                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Link This issue relates to IGBF-3436 [ IGBF-3436 ]
                Mdavis4290 Molly Davis made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                Mdavis4290 Molly Davis made changes -
                Description Create a Markdown creating and summarizing temperature:genotype interaction testing.

                Please follow the same general pattern as in the other statistical analysis markdowns.

                Start with data from SL4 not SL5.

                If the output is per time, then include a column: time indicating the time point being tested.

                		Create a Markdown creating and summarizing temperature:genotype interaction testing.

                Please follow the same general pattern as in the other statistical analysis markdowns.

                Start with data from SL4 not SL5.

                If the output is per time, then include a column: time indicating the time point being tested.

                Code Sources:

                https://rdrr.io/bioc/DESeq2/man/results.html#:~:text=object)%24tDegreesFreedom%20.-,Value,standard%20error%20of%20the%20log2FoldChange%20.
                https://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#note-on-factor-levels
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Molly Davis [ molly ]
                ann.loraine Ann Loraine made changes -
                Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
                Mdavis4290 Molly Davis made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ] Ann Loraine [ aloraine ]
                Mdavis4290 Molly Davis made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ] Ann Loraine [ aloraine ]
                Mdavis4290 Molly Davis made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-3463 [ IGBF-3463 ]
                ann.loraine Ann Loraine made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                ann.loraine Ann Loraine made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Molly Davis [ molly ]

                  People

                  • Assignee:
                    Mdavis4290 Molly Davis
                    Reporter:
                    ann.loraine Ann Loraine
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: