Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-3460

Make Markdown creating and summarizing temperature:genotype interaction testing

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Create a Markdown creating and summarizing temperature:genotype interaction testing.

          Please follow the same general pattern as in the other statistical analysis markdowns.

          Start with data from SL4 not SL5.

          If the output is per time, then include a column: time indicating the time point being tested.

          Code Sources:

          https://rdrr.io/bioc/DESeq2/man/results.html#:~:text=object)%24tDegreesFreedom%20.-,Value,standard%20error%20of%20the%20log2FoldChange%20.
          https://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#note-on-factor-levels

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-3463 Update readme

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3436 Compare temperature responsiveness between genotypes using DESeq2

              • Major - Major loss of function.
              • Closed

                Activity

                  People

                  • Assignee:
                    Mdavis4290 Molly Davis
                    Reporter:
                    ann.loraine Ann Loraine
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: