Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-3461

Compare 34 degrees and 75 minutes mutant and wildtype

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Find genes, if any, that are differentially expressed between mutant and wildtype (are and VF36 genotypes) at 34 degrees at 75 minutes.

            Attachments

              Activity

              Ascending order - Click to sort in descending order
              ann.loraine Ann Loraine created issue -
              ann.loraine Ann Loraine made changes -
              Field Original Value New Value
              Status To-Do [ 10305 ] In Progress [ 3 ]
              Hide
              Permalink
              ann.loraine Ann Loraine added a comment -

              Adding new analysis to FindMutantVsWildtypeDEGenes-DESeq2.Rmd

              Show
              ann.loraine Ann Loraine added a comment - Adding new analysis to FindMutantVsWildtypeDEGenes-DESeq2.Rmd
              ann.loraine Ann Loraine made changes -
              Comment [ Instead of merging directly into main I'm going to use a branch. ]
              ann.loraine Ann Loraine made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              ann.loraine Ann Loraine made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              ann.loraine Ann Loraine made changes -
              Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
              ann.loraine Ann Loraine made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
              ann.loraine Ann Loraine made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              ann.loraine Ann Loraine made changes -
              Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ]
              Hide
              Permalink
              ann.loraine Ann Loraine added a comment -

              The new file outputs additional text files to results:

              • MvW.34.75-[assembly].txt - where "assembly" is one of "SL4" or "SL5."

              Changes are merged into main branch in the team repository.

              Show
              ann.loraine Ann Loraine added a comment - The new file outputs additional text files to results: MvW.34.75- [assembly] .txt - where "assembly" is one of "SL4" or "SL5." Changes are merged into main branch in the team repository.
              Mdavis4290 Molly Davis made changes -
              Epic Link IGBF-3446 [ 22548 ]
              Mdavis4290 Molly Davis made changes -
              Sprint Fall 3 2023 Oct 2 [ 179 ]
              Mdavis4290 Molly Davis made changes -
              Assignee Molly Davis [ molly ]
              ann.loraine Ann Loraine made changes -
              Assignee Molly Davis [ molly ]
              Mdavis4290 Molly Davis made changes -
              Assignee Molly Davis [ molly ]
              Mdavis4290 Molly Davis made changes -
              Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
              Hide
              Permalink
              Mdavis4290 Molly Davis added a comment -

              Testing:

              • Markdown: knitted the markdown and had no errors
              • Output: The output for SL4 & SL5 looks good

              Moving to Done!

              Show
              Mdavis4290 Molly Davis added a comment - Testing : Markdown: knitted the markdown and had no errors Output: The output for SL4 & SL5 looks good Moving to Done!
              Mdavis4290 Molly Davis made changes -
              Resolution Done [ 10000 ]
              Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
              Mdavis4290 Molly Davis made changes -
              Assignee Molly Davis [ molly ] Ann Loraine [ aloraine ]

                People

                • Assignee:
                  ann.loraine Ann Loraine
                  Reporter:
                  ann.loraine Ann Loraine
                • Votes:
                  0 Vote for this issue
                  Watchers:
                  2 Start watching this issue

                  Dates

                  • Created:
                    Updated:
                    Resolved: