Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Sprint:Fall 3 2023 Oct 2
Description
EBSEQ-HMM should be able to predict whether gene increase or decrease over time using a HMM.
And it does this well!
BUT it should also be able to identify when states go from "Even expression" to high or low.
And I can't seem to detect any genes that do this.
Example:
"c..Up.Up.Up....14...Down.Up.Up....40...Up.Down.Up....169...Down.Down.Up....59.."
"Up-Up-Up" 14
"Down-Up-Up" 40
"Up-Down-Up" 169
"Down-Down-Up" 59
"Up-Up-Down" 13
"Down-Up-Down" 207
"Up-Down-Down" 32
"EE-Up-Up" 0
"Up-EE-Up" 0
"EE-EE-Up" 0
"Down-EE-Up" 0
"EE-Down-Up" 0
"Up-Up-EE" 0
"EE-Up-EE" 0
"Down-Up-EE" 0
"Up-EE-EE" 0
"Up-Down-EE" 0
"EE-Up-Down" 0
"Up-EE-Down" 0
"Down-Down-Down" 3
"Down-EE-EE" 0
"EE-Down-EE" 0
"Down-Down-EE" 0
"EE-EE-Down" 0
"Down-EE-Down" 0
"EE-Down-Down" 0
EE means even expression.
They are all zero.
And that happens in all 6 instances. Which is EXTREMELY unlikley.
I am missing something.
So this task is to figure out what I am missing!
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