Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-3463

Update readme

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Please update the README in the results folder to show the new files.

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-3460 Make Markdown creating and summarizing temperature:genotype interaction testing

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                ann.loraine Ann Loraine created issue -
                ann.loraine Ann Loraine made changes -
                Field Original Value New Value
                Epic Link IGBF-3446 [ 22548 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-3460 [ IGBF-3460 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                Mdavis4290 Molly Davis made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                Hide
                Permalink
                Mdavis4290 Molly Davis added a comment -

                Branch: https://bitbucket.org/mdavis4290/molly3-flavonoid-rnaseq/branch/IGBF-3463

                Show
                Mdavis4290 Molly Davis added a comment - Branch : https://bitbucket.org/mdavis4290/molly3-flavonoid-rnaseq/branch/IGBF-3463
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                Hide
                Permalink
                ann.loraine Ann Loraine added a comment -

                unassigning because others can review this besides me.

                Show
                ann.loraine Ann Loraine added a comment - unassigning because others can review this besides me.
                Mdavis4290 Molly Davis made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                Mdavis4290 Molly Davis made changes -
                Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
                Mdavis4290 Molly Davis made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ]
                Hide
                Permalink
                Mdavis4290 Molly Davis added a comment - - edited

                Reviewer:

                Repo: https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/results/

                • Check that the README file explains each output file thoroughly and clearly.
                • Also check that my branch is adding the final files _MvW-temp-[assembly].xlsx _ explanation correctly.

                Thanks!

                Show
                Mdavis4290 Molly Davis added a comment - - edited Reviewer : Repo : https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/results/ Check that the README file explains each output file thoroughly and clearly. Also check that my branch is adding the final files _MvW-temp- [assembly] .xlsx _ explanation correctly. Thanks!
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                Hide
                Permalink
                ann.loraine Ann Loraine added a comment - - edited

                To view the proposed edits, I visited this link: https://bitbucket.org/mdavis4290/molly3-flavonoid-rnaseq/src/IGBF-3463/

                I navigated to the "results" folder: 72_F3H_PollenTube/results and looked at the README.md in the bitbucket interface.

                The text looks good. It basically says that the file FindTreatmentEffectAcrossGenotypes-DESeq2.Rmd makes MvW-temp-[assembly].xlsx for both assemblies SL4 and SL5.

                To make sure I could assess statements about these files, I looked at the code in FindTreatmentEffectAcrossGenotypes-DESeq2.Rmd. The README.md text made this possible because it identified the source .Rmd file used to create the documented results files.

                I saw the code imports 3rd party excel input/output code to create spreadsheets with tabs for each treatment duration collection.

                I did not try to run the code due to laziness.

                Moving to "ready for pull request."

                Show
                ann.loraine Ann Loraine added a comment - - edited To view the proposed edits, I visited this link: https://bitbucket.org/mdavis4290/molly3-flavonoid-rnaseq/src/IGBF-3463/ I navigated to the "results" folder: 72_F3H_PollenTube/results and looked at the README.md in the bitbucket interface. The text looks good. It basically says that the file FindTreatmentEffectAcrossGenotypes-DESeq2.Rmd makes MvW-temp- [assembly] .xlsx for both assemblies SL4 and SL5. To make sure I could assess statements about these files, I looked at the code in FindTreatmentEffectAcrossGenotypes-DESeq2.Rmd. The README.md text made this possible because it identified the source .Rmd file used to create the documented results files. I saw the code imports 3rd party excel input/output code to create spreadsheets with tabs for each treatment duration collection. I did not try to run the code due to laziness. Moving to "ready for pull request."
                ann.loraine Ann Loraine made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Molly Davis [ molly ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 3 2023 Oct 2 [ 179 ] Fall 3 2023 Oct 2, Fall 4 2023 Oct 16 [ 179, 180 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                Hide
                Permalink
                Mdavis4290 Molly Davis added a comment -

                PR: https://bitbucket.org/hotpollen/flavonoid-rnaseq/pull-requests/27

                Show
                Mdavis4290 Molly Davis added a comment - PR : https://bitbucket.org/hotpollen/flavonoid-rnaseq/pull-requests/27
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                Hide
                Permalink
                ann.loraine Ann Loraine added a comment -

                PR is merged. Ready for testing.

                Show
                ann.loraine Ann Loraine added a comment - PR is merged. Ready for testing.
                Hide
                Permalink
                Mdavis4290 Molly Davis added a comment -

                Everything looks up to date in the README in the main repo.
                Moving to done!

                Show
                Mdavis4290 Molly Davis added a comment - Everything looks up to date in the README in the main repo. Moving to done!
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                Mdavis4290 Molly Davis made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

                  People

                  • Assignee:
                    Mdavis4290 Molly Davis
                    Reporter:
                    ann.loraine Ann Loraine
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: