Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-3464

Deploy htsjdk-igb

        Details

          Description

          Situation: In order to add CRAM file support (IGBF-1469) we need to update the HTSJDK dependency version. Currently we are using the artifact htsjdk-igb.

          Task: Investigate our use of the htsjdk-igb dependency. Determine how we can update this dependency.

          Github repo: https://github.com/lorainelab/htsjdk-igb

            Attachments

              Issue Links

              blocks

              New Feature - A new feature of the product, which has yet to be developed. IGBF-3478 Add CRAM support to IGB

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-1469 Investigate supporting CRAM files

              • Major - Major loss of function.
              • Closed
              is blocked by

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-3465 Update BigWig/BigBed htsjdk-igb version

              • Major - Major loss of function.
              • Closed
              relates to

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-1418 Import htsjdk as OSGi bundle

              • Critical - Crashes, loss of data, severe memory leak.
              • Closed

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-3484 Update htsjdk-igb to 3.0.0

              • Major - Major loss of function.
              • Closed

                Activity

                No work has yet been logged on this issue.

                  People

                  • Assignee:
                    kgopu Kaushik Gopu
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: