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  1. IGB
  2. IGBF-3471

Add SL4 and SL5 salmon.merged.gene_counts.tsv for 30-681594536 to repository

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Repository pistil-rna-seq lacks "counts" files for data set 30-681594536 even though multiqc_report and _samples.csv files are present.

          For this task, add these two files to pistil-rna-seq/ExternalData:

          using naming convention:

          [data set]_[assembly]_salmon.merged.gene_counts.tsv

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              ann.loraine Ann Loraine added a comment -

              Pulled main to my local:

              Fast-forward
 ExternalData/30-681594536_SL4_salmon.merged.gene_counts.tsv | 34076 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 ExternalData/30-681594536_SL5_salmon.merged.gene_counts.tsv | 36649 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 2 files changed, 70725 insertions(+)

              Number of inserted (new) lines matches with results from related ticketed IGBF-3466.

              Sanity checking passed. Moving to DONE.

              Show
              ann.loraine Ann Loraine added a comment - Pulled main to my local: Fast-forward ExternalData/30-681594536_SL4_salmon.merged.gene_counts.tsv | 34076 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ExternalData/30-681594536_SL5_salmon.merged.gene_counts.tsv | 36649 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 70725 insertions(+) Number of inserted (new) lines matches with results from related ticketed IGBF-3466 . Sanity checking passed. Moving to DONE.
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              Mdavis4290 Molly Davis added a comment -

              PR: https://bitbucket.org/hotpollen/pistil-rna-seq/pull-requests/12

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              Mdavis4290 Molly Davis added a comment - PR : https://bitbucket.org/hotpollen/pistil-rna-seq/pull-requests/12
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              Mdavis4290 Molly Davis added a comment -

              Branch: https://bitbucket.org/mdavis4290/molly-pistil-rna-seq/branch/IGBF-3471

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              Mdavis4290 Molly Davis added a comment - Branch : https://bitbucket.org/mdavis4290/molly-pistil-rna-seq/branch/IGBF-3471

                People

                • Assignee:
                  Mdavis4290 Molly Davis
                  Reporter:
                  ann.loraine Ann Loraine
                • Votes:
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                  Dates

                  • Created:
                    Updated:
                    Resolved: