Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Sprint:Fall 5, Fall 6
Description
Markdown: FindMutantVsWildtypeDEGenes-DESeq2.Rmd
Code issue: v = rs$padj<=Q & rs$log2FoldChange>=lfcThreshold
The issue with this code is that it only includes the greater than or equal to log2foldchange of just 1 and we want to include -1 as well. To fix this use the abs() function. The comps values (# of genes) should be higher after this is fixed.
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-3446 [ 22548 ] |
| Rank | Ranked higher |
| Summary | Fix bug in MutantvsWildtype markdown and include absolute value for log2foldchange | Fix bug in MutantvsWildtype markdown which includes adding absolute value for log2foldchange |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Summary | Fix bug in MutantvsWildtype markdown which includes adding absolute value for log2foldchange | Fix bug in MutantvsWildtype markdown |
| Assignee | Molly Davis [ molly ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Molly Davis [ molly ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Molly Davis [ molly ] |
| Assignee | Robert Reid [ robertreid ] |
| Rank | Ranked higher |
| Sprint | Fall 5 [ 181 ] | Fall 5, Fall 6 [ 181, 182 ] |
| Rank | Ranked higher |
| Assignee | Robert Reid [ robertreid ] | Molly Davis [ molly ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |