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  1. IGB
  2. IGBF-3487

Fix bug in MutantvsWildtype markdown

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        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          Markdown: FindMutantVsWildtypeDEGenes-DESeq2.Rmd

          Code issue: v = rs$padj<=Q & rs$log2FoldChange>=lfcThreshold

          The issue with this code is that it only includes the greater than or equal to log2foldchange of just 1 and we want to include -1 as well. To fix this use the abs() function. The comps values (# of genes) should be higher after this is fixed.

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                • Assignee:
                  Mdavis4290 Molly Davis
                  Reporter:
                  Mdavis4290 Molly Davis
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