Details
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Type: Task
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Status: Closed (View Workflow)
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Priority: Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Fall 5, Fall 6
Description
The HTSJDK 3.0.0 has a vulnerability caused by a dependency on the commons-compress library. The HTSJDK 3.0.5 release includes minor features and resolves the vulnerability.
Note: This is the final version of HTSJDK to support Java 8
Kaushik Gopu - Need to update htsjdk-igb to 3.0.5 in project pom and fix the test issue in GenotypingResults pom. Would be similar to this commit: https://bitbucket.org/kaushik-gopu/kgopu_integrated-genome-browser/commits/543ea431d2dc86f0c2a0bb9b72e350cccf388e0a