SRP Experiments:

mark-2022-timeseries = SRP441343

• Name = Johnson, Mark
• Contact email = mark_johnson_1@brown.edu
• University name = Brown University
• Lab link: https://www.brown.edu/Departments/Molecular_Biology/pgl/index.html

mark-2020-pollentube = SRP252265

• Name = Johnson, Mark
• Contact email = mark_johnson_1@brown.edu
• University name = Brown University
• Lab link: https://www.brown.edu/Departments/Molecular_Biology/pgl/index.html

muday-2022-timeseries = SRP460750

• Name = Gloria K. Muday
• Contact email = muday@wfu.edu
• University name = Wake Forest University
• Lab link: https://muday.sites.wfu.edu/

seedlingPollen = SRP438952

• Name = Johnson, Mark
• Contact email = mark_johnson_1@brown.edu
• University name = Brown University
• Lab link: https://www.brown.edu/Departments/Molecular_Biology/pgl/index.html

30-681594536 = SRP486761

• Name = Palanivelu, Ravishankar
• Contact email = rpalaniv@arizona.edu
• University name = University of Arizona, School of Plant Sciences
• Lab link: http://ag.arizona.edu/research/ravilab

30-804059537 = SRP487154

• Name = Palanivelu, Ravishankar
• Contact email = rpalaniv@arizona.edu
• University name = University of Arizona, School of Plant Sciences
• Lab link: http://ag.arizona.edu/research/ravilab

30-605730043 = SRP482647

• Name = Palanivelu, Ravishankar
• Contact email = rpalaniv@arizona.edu
• University name = University of Arizona, School of Plant Sciences
• Lab link: http://ag.arizona.edu/research/ravilab

Reviewer:

• Please ensure all information above is correct
• If you know the lab links for Muday or Mark please fill that in
• For each submission edit and ensure all information above is included and visible to readers

Thank you!

For Mark, he has a lab page:

https://www.brown.edu/Departments/Molecular_Biology/pgl/index.html

I can't edit the above page.

The Muday lab has a site too!

Gloria Muday
https://muday.sites.wfu.edu/

For the submitted by details, there is no easy way to change that. I don't think it matters much.

A side note, this paper exist now.

Flavonols improve thermotolerance in tomato pollen during germination and tube elongation by maintaining ROS homeostasis
Anthony E. Postiglione, Allison M. Delange, Mohammad Foteh Ali, Maarten Houben, Eric Y. Wang, Stacy L. Hahn, Colleen M. Roark, Molly Davis, Robert W. Reid, James B. Pease, Ann E. Loraine, Gloria K. Muday
Version 1. bioRxiv. Preprint. 2023 Dec 23. doi: 10.1101/2023.12.23.573189
PMCID: PMC10769439
ArticlePDF–2.9M

And I should update the SRP to include this. So I will keep this ticket and task for the moment.

Added to
https://dataview.ncbi.nlm.nih.gov/object/PRJNA1017816

They claim it will take a few hours to update.

Once the paper is published, I will need to update the BioProject again.

Message from the SRA:

Dear Robert W Reid,

We have finished processing project information updates related to BioProject PRJNA1017816.

Thank you!

This is an automatic acknowledgment that your submission:

SubmissionID: SUB10536172
BioProject ID: PRJNA1017816
Title:

has been updated, eg by the linkage of one or more BioSamples. The locus_tag prefixes for
each linked BioSample are included in the locustagprefix.txt file that can accessed
from this BioProject in the submission portal:

https://submit.ncbi.nlm.nih.gov/subs/bioproject/SUB10536172/overview

The Bioproject updated, all good!

I think this is all good.

Molly,
Just add the lab websites in the comments above to the summary and then done.

Next Step: Create a document with all the information above and share with tomato group.

I have created the Doc in the shared GTTR Google Drive.

It is in the top layer of experiments.

https://docs.google.com/document/d/1pob8hHpQwQ6KMeHcVsHQ9AERclpv83MJThqoSDm_vFY/edit?usp=drive_link

I think we can move this to done?

I guess next step, is we send email out to the entire group with the info so that they know where to access it also.

I can send. Let's discuss!

I went ahead and added the NCBI link to the information as well so the data is easily found. Next step is to email tomato group.

Dr. Reid would you like to send the email out then move this ticket to done?

Robert Reid