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  1. IGB
  2. IGBF-3498

Review SRA Submissions

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Review the SRA submissions made for Ravi, Johnson, and Muday lab. For this ticket:

          • Collect all SRP names associated with the labs and submissions
          • Review the SRP on NCBI and ensure it is associated with the correct lab
          • Review details of the experiment including the descriptions and who the data belongs to
          • Ensure names and contacts are added to each experiment
          • Review the data and ensure all is accounted for

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-3544 Re-run mature pollen and seedling pipeline with SL4 using data newly submitted to SRA

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3545 Re-run nextflow Mark pollen tube data for SL4 and SL5 with data dowloaded from SRA

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3253 Submit Muday time course data to SRA

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3254 Submit Johnson lab mature pollen and tomato seedling data to SRA

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3365 Prepping data and entries for SRA for Ravi / Kelsey data

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3406 Re-run Nextflow Muday time course data with SL5 data downloaded from SRA

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3424 Re-run mature pollen and seedling pipeline with SL5 using data newly submitted to SRA

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                Mdavis4290 Molly Davis created issue -
                Mdavis4290 Molly Davis made changes -
                Field Original Value New Value
                Epic Link IGBF-2993 [ 21429 ]
                Mdavis4290 Molly Davis made changes -
                Link This issue relates to IGBF-3253 [ IGBF-3253 ]
                Mdavis4290 Molly Davis made changes -
                Link This issue relates to IGBF-3254 [ IGBF-3254 ]
                Mdavis4290 Molly Davis made changes -
                Link This issue relates to IGBF-3424 [ IGBF-3424 ]
                Mdavis4290 Molly Davis made changes -
                Link This issue relates to IGBF-3406 [ IGBF-3406 ]
                Mdavis4290 Molly Davis made changes -
                Link This issue relates to IGBF-3365 [ IGBF-3365 ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 6 [ 182 ] Fall 6, Fall 7 [ 182, 183 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                Mdavis4290 Molly Davis made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 6, Fall 7 [ 182, 183 ] Fall 6, Fall 7, Fall 8 [ 182, 183, 184 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Fall 6, Fall 7, Fall 8 [ 182, 183, 184 ] Fall 6, Fall 7 [ 182, 183 ]
                Mdavis4290 Molly Davis made changes -
                Sprint Fall 6, Fall 7 [ 182, 183 ] Fall 6, Fall 7, Spring 1 [ 182, 183, 185 ]
                Mdavis4290 Molly Davis made changes -
                Link This issue relates to IGBF-3544 [ IGBF-3544 ]
                Mdavis4290 Molly Davis made changes -
                Link This issue relates to IGBF-3545 [ IGBF-3545 ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 6, Fall 7, Spring 1 [ 182, 183, 185 ] Fall 6, Fall 7, Spring 1, Spring 2 [ 182, 183, 185, 186 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                Mdavis4290 Molly Davis made changes -
                Sprint Fall 6, Fall 7, Spring 1, Spring 2 [ 182, 183, 185, 186 ] Fall 6, Fall 7, Spring 1 [ 182, 183, 185 ]
                Mdavis4290 Molly Davis made changes -
                Sprint Fall 6, Fall 7, Spring 1 [ 182, 183, 185 ] Fall 6, Fall 7, Spring 1, Spring 2 [ 182, 183, 185, 186 ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 6, Fall 7, Spring 1, Spring 2 [ 182, 183, 185, 186 ] Fall 6, Fall 7, Spring 1, Spring 2, Spring 3 [ 182, 183, 185, 186, 187 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                Mdavis4290 Molly Davis made changes -
                Sprint Fall 6, Fall 7, Spring 1, Spring 2, Spring 3 [ 182, 183, 185, 186, 187 ] Fall 6, Fall 7, Spring 1, Spring 2 [ 182, 183, 185, 186 ]
                Mdavis4290 Molly Davis made changes -
                Sprint Fall 6, Fall 7, Spring 1, Spring 2 [ 182, 183, 185, 186 ] Fall 6, Fall 7, Spring 1, Spring 2, Spring 3 [ 182, 183, 185, 186, 187 ]
                Mdavis4290 Molly Davis made changes -
                Rank Ranked higher
                Mdavis4290 Molly Davis made changes -
                Description Review the SRA submissions made for Ravi, Johnson, and Muday lab. For this ticket:

                * Collect all SRP names associated with the labs and submissions
                * Review the SRP on NCBI and ensure it is associated with the correct lab
                * Review details of the experiment including the descriptions and who the data belongs to
                * Ensure names and contacts are added to each experiment
                * Review the data and ensure all is accounted for
                * Review the reruns on the cluster make sure the data from NCBI can be used

                		Review the SRA submissions made for Ravi, Johnson, and Muday lab. For this ticket:

                * Collect all SRP names associated with the labs and submissions
                * Review the SRP on NCBI and ensure it is associated with the correct lab
                * Review details of the experiment including the descriptions and who the data belongs to
                * Ensure names and contacts are added to each experiment
                * Review the data and ensure all is accounted for
                 

                Mdavis4290 Molly Davis made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Robert Reid [ robertreid ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 6, Fall 7, Spring 1, Spring 2, Spring 3 [ 182, 183, 185, 186, 187 ] Fall 6, Fall 7, Spring 1, Spring 2, Spring 3, Spring 4 [ 182, 183, 185, 186, 187, 188 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                Mdavis4290 Molly Davis made changes -
                Assignee Robert Reid [ robertreid ] Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                Mdavis4290 Molly Davis made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                Mdavis4290 Molly Davis made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                Mdavis4290 Molly Davis made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ] Robert Reid [ robertreid ]
                Mdavis4290 Molly Davis made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Robert Reid [ robertreid ] Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ] Robert Reid [ robertreid ]
                Mdavis4290 Molly Davis made changes -
                Status Post-merge Testing In Progress [ 10003 ] Merged Needs Testing [ 10002 ]
                Mdavis4290 Molly Davis made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Robert Reid [ robertreid ] Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                Mdavis4290 Molly Davis made changes -
                Sprint Fall 6, Fall 7, Spring 1, Spring 2, Spring 3, Spring 4 [ 182, 183, 185, 186, 187, 188 ] Fall 6, Fall 7, Spring 1, Spring 2, Spring 3, Spring 4, Spring 9 [ 182, 183, 185, 186, 187, 188, 193 ]
                Mdavis4290 Molly Davis made changes -
                Resolution Done [ 10000 ]
                Status Closed [ 6 ] To-Do [ 10305 ]
                Mdavis4290 Molly Davis made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                Mdavis4290 Molly Davis made changes -
                Rank Ranked higher
                Mdavis4290 Molly Davis made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                Mdavis4290 Molly Davis made changes -
                Rank Ranked higher
                Mdavis4290 Molly Davis made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                Mdavis4290 Molly Davis made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                Mdavis4290 Molly Davis made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                Mdavis4290 Molly Davis made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                Mdavis4290 Molly Davis made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                Mdavis4290 Molly Davis made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                Mdavis4290 Molly Davis made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                Mdavis4290 Molly Davis made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                Mdavis4290 Molly Davis made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

                  People

                  • Assignee:
                    Mdavis4290 Molly Davis
                    Reporter:
                    Mdavis4290 Molly Davis
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: