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  1. IGB
  2. IGBF-3498

Review SRA Submissions

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Review the SRA submissions made for Ravi, Johnson, and Muday lab. For this ticket:

          • Collect all SRP names associated with the labs and submissions
          • Review the SRP on NCBI and ensure it is associated with the correct lab
          • Review details of the experiment including the descriptions and who the data belongs to
          • Ensure names and contacts are added to each experiment
          • Review the data and ensure all is accounted for

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-3544 Re-run mature pollen and seedling pipeline with SL4 using data newly submitted to SRA

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3545 Re-run nextflow Mark pollen tube data for SL4 and SL5 with data dowloaded from SRA

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3253 Submit Muday time course data to SRA

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3254 Submit Johnson lab mature pollen and tomato seedling data to SRA

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3365 Prepping data and entries for SRA for Ravi / Kelsey data

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3406 Re-run Nextflow Muday time course data with SL5 data downloaded from SRA

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3424 Re-run mature pollen and seedling pipeline with SL5 using data newly submitted to SRA

              • Major - Major loss of function.
              • Closed

                Activity

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                  People

                  • Assignee:
                    Mdavis4290 Molly Davis
                    Reporter:
                    Mdavis4290 Molly Davis
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                    Dates

                    • Created:
                      Updated:
                      Resolved: