Details
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Type: Task
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Status: Closed (View Workflow)
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Priority: Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Fall 6, Fall 7
Description
Task: Explore the IGB DAS module to understand how UCSC DAS data is ingested by IGB.
Attachments
Activity
Nowlan Freese
created issue -
Nowlan Freese
made changes -
Field | Original Value | New Value |
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Epic Link |
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Jaya Sravani Sirigineedi
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Ann Loraine
made changes -
Sprint | Fall 6 [ 182 ] | Fall 6, Fall 7 [ 182, 183 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Jaya Sravani Sirigineedi
made changes -
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Jaya Sravani Sirigineedi
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Jaya Sravani Sirigineedi
made changes -
Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Jaya Sravani Sirigineedi
made changes -
Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Jaya Sravani Sirigineedi
made changes -
Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Jaya Sravani Sirigineedi
made changes -
Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Jaya Sravani Sirigineedi
made changes -
Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
Jaya Sravani Sirigineedi
made changes -
Resolution | Done [ 10000 ] | |
Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Currently going through the class DasDataProvider, which is used to set up the DasDataProvider. The initialize() method is used to retrieve the dsn response from https://genome.ucsc.edu/cgi-bin/das/dsn this URL and store all the available genomes in genomeContextRootMap with the sourceid as key and MapMaster URL as value. The getAvailableDataSets() is used to get all the available datasets (types) for the selected genome and its version by using https://genome.ucsc.edu/cgi-bin/das/hg38/types this URL. The URL connection, request, and getting a response are done in the DasServerUtils class, retrieveDsnResponse() and retrieveDasTypesResponse() are the corresponding methods.