[IGBF-3514] Investigate errors in IGB when View in IGB is invoked - JIRA UNCC

Details

Type: Task
Status: Closed (View Workflow)
Priority: Major
Resolution: Done
Affects Version/s: None
Fix Version/s: None
Labels:
None

Story Points:
2
Epic Link:
Maintain BioViz Connect
Sprint:
Fall 8, Spring 1

Description

When the View in IGB in Bioviz Connect is clicked on IGB loads the file the first time but when View in IGB in another file is clicked it throws the following error:

java.lang.NullPointerException: Cannot invoke "java.util.Optional.ifPresent(java.util.function.Consumer)" because the return value of "com.affymetrix.igb.view.load.GeneralLoadUtils.getDataSet(java.net.URI, java.util.Optional, String, String, com.affymetrix.genometry.GenomeVersion, boolean)" is null
	at com.affymetrix.igb.view.load.GeneralLoadUtils.openURI(GeneralLoadUtils.java:967)
	at com.affymetrix.igb.IgbServiceImpl.openURI(IgbServiceImpl.java:363)
	at com.affymetrix.igb.bookmarks.BookmarkUnibrowControlServlet.directlyLoadFile(BookmarkUnibrowControlServlet.java:589)
	at com.affymetrix.igb.bookmarks.BookmarkUnibrowControlServlet.lambda$directlyLoadUrls$8(BookmarkUnibrowControlServlet.java:578)
	at java.base/java.util.HashMap.forEach(HashMap.java:1429)
	at com.affymetrix.igb.bookmarks.BookmarkUnibrowControlServlet.directlyLoadUrls(BookmarkUnibrowControlServlet.java:577)
	at com.affymetrix.igb.bookmarks.BookmarkUnibrowControlServlet$1.runInBackground(BookmarkUnibrowControlServlet.java:247)
	at com.affymetrix.genometry.thread.CThreadWorker.doInBackground(CThreadWorker.java:73)
	at java.desktop/javax.swing.SwingWorker$1.call(SwingWorker.java:305)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:317)
	at java.desktop/javax.swing.SwingWorker.run(SwingWorker.java:342)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1144)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:642)
	at java.base/java.lang.Thread.run(Thread.java:1583)

Attachments

Issue Links

blocks

IGBF-3510 Smoke Test JDK 21 in Windows

Closed

Activity

Ascending order - Click to sort in descending order

Karthik Raveendran created issue - 11/Dec/23 10:57 AM

Karthik Raveendran made changes - 11/Dec/23 10:57 AM

Field	Original Value	New Value
Epic Link		IGBF-3142 [ 21688 ]

Karthik Raveendran made changes - 11/Dec/23 10:57 AM

Link

This issue blocks ~~IGBF-3510~~ [ ~~IGBF-3510~~ ]

Karthik Raveendran made changes - 11/Dec/23 10:57 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Karthik Raveendran made changes - 11/Dec/23 11:11 AM

Description

When the View in IGB in Bioviz Connect is clicked on IGB loads the file the first time but when View in IGB in another file is clicked it throws the following error:

{code:java}
java.lang.NullPointerException: Cannot invoke "java.util.Optional.ifPresent(java.util.function.Consumer)" because the return value of "com.affymetrix.igb.view.load.GeneralLoadUtils.getDataSet(java.net.URI, java.util.Optional, String, String, com.affymetrix.genometry.GenomeVersion, boolean)" is null
at com.affymetrix.igb.view.load.GeneralLoadUtils.openURI(GeneralLoadUtils.java:967)
at com.affymetrix.igb.IgbServiceImpl.openURI(IgbServiceImpl.java:363)
at com.affymetrix.igb.bookmarks.BookmarkUnibrowControlServlet.directlyLoadFile(BookmarkUnibrowControlServlet.java:589)
at com.affymetrix.igb.bookmarks.BookmarkUnibrowControlServlet.lambda$directlyLoadUrls$8(BookmarkUnibrowControlServlet.java:578)
at java.base/java.util.HashMap.forEach(HashMap.java:1429)
at com.affymetrix.igb.bookmarks.BookmarkUnibrowControlServlet.directlyLoadUrls(BookmarkUnibrowControlServlet.java:577)
at com.affymetrix.igb.bookmarks.BookmarkUnibrowControlServlet$1.runInBackground(BookmarkUnibrowControlServlet.java:247)
at com.affymetrix.genometry.thread.CThreadWorker.doInBackground(CThreadWorker.java:73)
at java.desktop/javax.swing.SwingWorker$1.call(SwingWorker.java:305)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:317)
at java.desktop/javax.swing.SwingWorker.run(SwingWorker.java:342)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1144)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:642)
at java.base/java.lang.Thread.run(Thread.java:1583)

{code}

Karthik Raveendran made changes - 11/Dec/23 11:11 AM

Summary

Fix errors in IGB when View in IGB is invoked

errors in IGB when View in IGB is invoked

Karthik Raveendran made changes - 11/Dec/23 11:11 AM

Summary

errors in IGB when View in IGB is invoked

Investigate errors in IGB when View in IGB is invoked

Ann Loraine made changes - 12/Dec/23 10:41 AM

Epic Link

IGBF-3142 [ 21688 ]

IGBF-2376 [ 18533 ]

Karthik Raveendran made changes - 15/Dec/23 10:36 AM

Status

In Progress [ 3 ]

To-Do [ 10305 ]

Ann Loraine made changes - 27/Dec/23 5:36 AM

Sprint

Fall 8 [ 184 ]

Fall 8, Spring 1 [ 184, 185 ]

Ann Loraine made changes - 27/Dec/23 5:36 AM

Rank

Ranked higher

Karthik Raveendran made changes - 29/Dec/23 2:14 PM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Ann Loraine made changes - 17/Jan/24 10:43 AM

Comment

[ Note from scrum:

* Be sure to check to see if this same problem is affecting the released version of IGB - version 9.1.10 ]

Karthik Raveendran made changes - 17/Jan/24 3:14 PM

Assignee

Karthik Raveendran [ karthik ]