Testing:

• Downloaded the logs from pipeline - https://bitbucket.org/lorainelab/integrated-genome-browser/pipelines/results/680
• No mention of hillrunner/norris/dcnorris, so it looks like David's repos have been replaced.
• The image used is listed as

  build : docker.io/lorainelab/igb-maven-install4j

• The env.sh file is not present in the Integrated Genome Browser folder after installation on Linux/Mac/(WINDOWS?)
• There are four files produced that are located in the Downloads folder:
  • IGB-macos-universal-main-JDK21-with-javafx-no-theme.dmg
  • IGB-windows-main-JDK21-with-javafx-no-theme_amd64.exe
  • IGB-linux-main-JDK21-with-javafx-no-theme_amd64.sh
  • main-JDK21-with-javafx-no-theme.jar
• The dmg, exe, and sh files work to install IGB on Mac M1 and Intel, Windows 10 and 11, and Ubuntu, respectively.

Closing ticket.

I forked DCN repository and checked that the pipelines could properly run using main-JDK21 branch.

My fork: https://bitbucket.org/aloraine/fork-of-hillrunner2008-igb/src/main-JDK21/

There are now four new installers for main-JDK21 available in https://bitbucket.org/aloraine/fork-of-hillrunner2008-igb/downloads/.

They are:

• IGB-macos-main-JDK21_amd64.dmg
• IGB-macos-main-JDK21_aarch64.dmg (new chip)
• IGB-windows-main-JDK21_amd64.exe
• IGB-linux-main-JDK21_amd64.sh

To test, confirm the installers work and can install the new version of IGB onto Linux, Apple Intel, Apple M1/2, and Windows platforms

Branch pipelines ran but release pipeline did not. Bitbucket yml file needs to be updated with new file names.

Testing strategy using aloraine fork:

• Fork David Norris repo (my fork: https://bitbucket.org/aloraine/fork-of-hillrunner2008-igb/src/main-JDK21/)
• Check out main-JDK21 from DN fork
• Push main-JDK21 to aloraine fork to trigger pipeline
• Check that release and branch pipelines can run