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  1. IGB
  2. IGBF-3520

Review scale of the Volcano plots regarding the Y axis ( -logPvalue)

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None

      Description

      Muday Lab Email:

      Question:
      "During James' careful read of the MS during this revision process to return the "rebuttal" to Plant Cell, he raised a question about the scale of the Volcano plots regarding the Y axis ( -logPvalue) on the volcano plots and we could not answer it. As we hope to send this into the review process either at Plant Cell (if they like our rebuttal) or move on to another journal, we'd like to talk about the Volcano plots as a group, so we can understand James' suggestion and how to address it."

      Meeting: December 14, 2023 @ 11am

      Task: Review the question and post notes and answers in this ticket.

        Attachments

          Issue Links

            Activity

            Mdavis4290 Molly Davis created issue -
            Mdavis4290 Molly Davis made changes -
            Field Original Value New Value
            Epic Link IGBF-3277 [ 22158 ]
            Mdavis4290 Molly Davis made changes -
            Link This issue relates to IGBF-3482 [ IGBF-3482 ]
            ann.loraine Ann Loraine made changes -
            Epic Link IGBF-3277 [ 22158 ] IGBF-3446 [ 22548 ]
            Mdavis4290 Molly Davis made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            Mdavis4290 Molly Davis made changes -
            Attachment FindControlVsStressDEGenes-SL4-DESeq2.pdf [ 18156 ]
            Mdavis4290 Molly Davis made changes -
            Assignee Molly Davis [ molly ]
            Mdavis4290 Molly Davis made changes -
            Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
            Mdavis4290 Molly Davis made changes -
            Assignee Robert Reid [ robertreid ]
            Mdavis4290 Molly Davis made changes -
            Mdavis4290 Molly Davis made changes -
            Attachment FindControlVsStressDEGenes-SL4-DESeq2.pdf [ 18156 ]
            Mdavis4290 Molly Davis made changes -
            Link This issue relates to IGBF-3529 [ IGBF-3529 ]
            Mdavis4290 Molly Davis made changes -
            Link This issue relates to IGBF-3530 [ IGBF-3530 ]
            Mdavis4290 Molly Davis made changes -
            Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
            Mdavis4290 Molly Davis made changes -
            Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
            Mdavis4290 Molly Davis made changes -
            Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
            Mdavis4290 Molly Davis made changes -
            Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
            Mdavis4290 Molly Davis made changes -
            Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
            Mdavis4290 Molly Davis made changes -
            Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
            Mdavis4290 Molly Davis made changes -
            Resolution Done [ 10000 ]
            Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

              People

              • Assignee:
                robofjoy Robert Reid
                Reporter:
                Mdavis4290 Molly Davis
              • Votes:
                0 Vote for this issue
                Watchers:
                3 Start watching this issue

                Dates

                • Created:
                  Updated:
                  Resolved: