Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Spring 1, Spring 2, Spring 3
Description
For Mark's study, at one point we have planned to merging multiple projects together with Glorias data.
They have since been separated into different Bioprojects.
The SRA samples have been separated.
However, I see the Biosamples have not yet been removed correctly.
The the SRA samples, I can edit and make the changes.
But that is not the case for biosample as far as I can tell.
So this task is to figure out how to get the extra biosamples removed from this bioproject PRJNA980666.
Attachments
Activity
Testing Jira.
I've deleted the links to PRJNA980666 on the BioSamples. I don't see any data links connecting the 15 BioSamples to PRJNA980666, so the incorrect links should disappear. It may take a day or two for the links in the public pages to be reindexed, so please check tomorrow.
Regards,
John B. Anderson, PhD
BioSample curation staff
I have sent the NCBI a reminder as an entirely new request:
Sent to: biosamplehelp@ncbi.nlm.nih.gov
Hi,
For this Bioproject:
https://dataview.ncbi.nlm.nih.gov/object/PRJNA980666
The following samples are listed in this Bioproject but no longer should be.
Right now they are assigned to 2 bioprojects.
They belong solely to BioProject: PRJNA1017816.
I have not found anywhere that I can make these edits.
(Their SRR counterparts are correct)
Rob Reid
Accession
SAMN36787018
SAMN36787017
SAMN36787016
SAMN36787015
SAMN36786978
SAMN36787014
SAMN36787013
SAMN36787012
SAMN36786983
SAMN36786982
SAMN36787045
SAMN36787044
SAMN36786981
SAMN36787043
SAMN36787042
SAMN36787040
SAMN36787041
SAMN36787039
SAMN36787038
SAMN36787037
SAMN36787034
SAMN36787035
SAMN36787036
SAMN36786980
SAMN36787011
SAMN36787010
SAMN36787009
SAMN36787008
SAMN36787007
SAMN36787006
SAMN36787005
SAMN36787033
SAMN36787004
SAMN36787032
SAMN36787031
SAMN36787029
SAMN36787030
SAMN36787028
SAMN36787027
SAMN36786977
SAMN36787026
SAMN36787003
SAMN36787002
SAMN36787001
SAMN36787000
SAMN36786999
SAMN36786998
SAMN36786997
SAMN36787025
SAMN36787024
SAMN36786979
SAMN36787023
SAMN36787022
SAMN36787021
SAMN36787019
SAMN36787020
SAMN36786996
SAMN36786995
SAMN36786994
SAMN36786993
SAMN36786991
SAMN36786992
SAMN36786990
SAMN36786989
SAMN36786987
SAMN36786988
SAMN36786986
SAMN36786985
SAMN36786984
SAMN36786974
SAMN36786975
SAMN36786976
The Biosamples in question are no longer connected to BioProject PRJNA980666 as seen when you download the NCBI file.
They have not yet updated 2 locations where it shows they still associated.
However when you click on the sample or SRA, it shows the proper Bioproject ID.
I am going to hurry up and wait and see if this jusst needs to to correct on their end.
I made the request with NCBI bioprojects and I am waiting to hear back from them.
I will take a peak at the current status.
Somehow, there are now 111 there still when I log into the submission portal.
However, if you go to NCBI (https://www.ncbi.nlm.nih.gov/), and do a search for:
PRJNA980666
It will return 1 Bioproject.
And 54 SRA samples. This is what we want!!!
I am ready to call this done!