Details
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Type: Task
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Status: Closed (View Workflow)
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Priority: Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Spring 3, Spring 5
Description
Situation: BioViz Connect uses a hardcoded list of IGB accepted file format extensions in order to correctly populate the View in IGB button. As we have now added support for cram, we need to update the list of file formats in BioViz Connect.
Task: Update BioViz Connect so that CRAM is an accepted file format. Note that as previous versions of IGB do not support the cram format, we will need to add some additional logic to BioViz Connect to check the version number of IGB and limit the View in IGB button for cram to newer versions.
Attachments
Issue Links
- is blocked by
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IGBF-3478 Add CRAM support to IGB
- Closed
Activity
Nowlan Freese
created issue -
Nowlan Freese
made changes -
Field | Original Value | New Value |
---|---|---|
Epic Link | IGBF-2376 [ 18533 ] |
Nowlan Freese
made changes -
Nowlan Freese
made changes -
Description |
Situation: BioViz Connect uses a hardcoded list of IGB accepted file format extensions in order to correctly populate the View in IGB button. As we have now added support for cram, we need to update the list of file formats in BioViz Connect.
Task: Update BioViz Connect so that cram is an accepted file format. |
Situation: BioViz Connect uses a hardcoded list of IGB accepted file format extensions in order to correctly populate the View in IGB button. As we have now added support for cram, we need to update the list of file formats in BioViz Connect.
Task: Update BioViz Connect so that cram is an accepted file format. Note that as previous versions of IGB do not support the cram format, we will need to add some additional logic to BioViz Connect to check the version number of IGB and limit the View in IGB button for cram to newer versions. |
Ann Loraine
made changes -
Assignee | Karthik Raveendran [ karthik ] |
Ann Loraine
made changes -
Summary | Add Cram to list of supported files for BioViz Connect | Add CRAM to list of supported files for BioViz Connect |
Ann Loraine
made changes -
Description |
Situation: BioViz Connect uses a hardcoded list of IGB accepted file format extensions in order to correctly populate the View in IGB button. As we have now added support for cram, we need to update the list of file formats in BioViz Connect.
Task: Update BioViz Connect so that cram is an accepted file format. Note that as previous versions of IGB do not support the cram format, we will need to add some additional logic to BioViz Connect to check the version number of IGB and limit the View in IGB button for cram to newer versions. |
Situation: BioViz Connect uses a hardcoded list of IGB accepted file format extensions in order to correctly populate the View in IGB button. As we have now added support for cram, we need to update the list of file formats in BioViz Connect.
Task: Update BioViz Connect so that CRAM is an accepted file format. Note that as previous versions of IGB do not support the cram format, we will need to add some additional logic to BioViz Connect to check the version number of IGB and limit the View in IGB button for cram to newer versions. |
Ann Loraine
made changes -
Description |
Situation: BioViz Connect uses a hardcoded list of IGB accepted file format extensions in order to correctly populate the View in IGB button. As we have now added support for cram, we need to update the list of file formats in BioViz Connect.
Task: Update BioViz Connect so that CRAM is an accepted file format. Note that as previous versions of IGB do not support the cram format, we will need to add some additional logic to BioViz Connect to check the version number of IGB and limit the View in IGB button for cram to newer versions. |
Situation: BioViz Connect uses a hardcoded list of IGB accepted file format extensions in order to correctly populate the View in IGB button. As we have now added support for cram, we need to update the list of file formats in BioViz Connect.
Task: Update BioViz Connect so that CRAM is an accepted file format. Note that as previous versions of IGB do not support the cram format, we will need to add some additional logic to BioViz Connect to check the version number of IGB and limit the View in IGB button for cram to newer versions. |
Karthik Raveendran
made changes -
Assignee | Karthik Raveendran [ karthik ] |
Karthik Raveendran
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Karthik Raveendran
made changes -
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Nowlan Freese
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Nowlan Freese
made changes -
Assignee | Karthik Raveendran [ karthik ] |
Nowlan Freese
made changes -
Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
Nowlan Freese
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Karthik Raveendran
made changes -
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Karthik Raveendran
made changes -
Assignee | Karthik Raveendran [ karthik ] |
Karthik Raveendran
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Karthik Raveendran
made changes -
Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Karthik Raveendran
made changes -
Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Ann Loraine
made changes -
Sprint | Spring 3 [ 187 ] | Spring 3, Spring 4 [ 187, 188 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Nowlan Freese
made changes -
Sprint | Spring 3, Spring 4 [ 187, 188 ] | Spring 3, Spring 5 [ 187, 189 ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] |
Nowlan Freese
made changes -
Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Nowlan Freese
made changes -
Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Nowlan Freese
made changes -
Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] | Karthik Raveendran [ karthik ] |
Nowlan Freese
made changes -
Resolution | Done [ 10000 ] | |
Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Here is some additional information on the CRAM file format if anyone would like to better familiarize themselves: https://academic.oup.com/bioinformatics/article/38/6/1497/6499262