Details
-
Type:
Task
-
Status: To-Do (View Workflow)
-
Priority:
Major
-
Resolution: Unresolved
-
Affects Version/s: None
-
Fix Version/s: None
-
Labels:None
-
Story Points:2
Description
It is obvious in the flavonoid volcano plots that there are more up-regulated genes than down-regulated genes. This makes our volcano plots look one sides and not balanced. We need to investigate whether this is accurate information and if it is how and why? Code vs Biology.
Files to possibly review:
Attachments
Issue Links
- relates to
-
-
- Closed
-
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-3446 [ 22548 ] |
| Description | It is obvious in the flavonoid volcano plots that there are more up-regulated genes than down-regulated genes. This makes our volcano plots look one sides and not balanced. We need to investigate whether this is accurate information and if it is how and why? |
It is obvious in the flavonoid volcano plots that there are more up-regulated genes than down-regulated genes. This makes our volcano plots look one sides and not balanced. We need to investigate whether this is accurate information and if it is how and why? Code vs Biology.
Files to possibly review: * Plots: https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/CustomVolcanoPlots-SL4-DeSeq2.pdf * Code: https://bitbucket.org/hotpollen/flavonoid-rnaseq/src/main/72_F3H_PollenTube/MakeCustomVolcanoPlots.Rmd |
| Sprint | Spring 2 [ 186 ] |