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  1. IGB
  2. IGBF-3584

Fix UCSC data tracks disappearing

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Minor
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: 10.1.0
    • Labels:
      None

      Description

      Situation - While testing IGBF-3528 we discovered that when the same UCSC REST or UCSC DAS track (for example, refGene) was loaded in two different genomes, the track would disappear.

      Task: Investigate this issue and propose a fix if possible.

      Note: This issue appears in 9.1.10 when loading UCSC DAS data as well as with the recent implementation of UCSC REST.

      To reproduce the issue:

      1. Select the mouse genome.
      2. Select Available Data > UCSC (DAS) > refGene
      3. Click Load Data
      4. Change to the human genome.
      5. Select Available Data > UCSC (DAS) > refGene
      6. Click Load Data
      7. Go back to the mouse genome
        1. The refGene added from UCSC should be missing from the Data Management Table. The data should still be present as a track, but grayed out as if it had not been loaded.

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              • Assignee:
                jsirigin Jaya Sravani Sirigineedi (Inactive)
                Reporter:
                nfreese Nowlan Freese
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                • Created:
                  Updated:
                  Resolved: