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  1. IGB
  2. IGBF-3613

Run nextflow with the original mature pollen and seedlings data with SL4

        Details

        • Type: Task
        • Status: In Progress (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Directory: /projects/tomato_genome/fnb/dataprocessing/seedlingPollen/nfcore-SL4

          It seems that the mature pollen and seedling data on the cluster was never run with SL4. This is important because we want to compare the original data with the rerun data. So to do that we have to run nextflow with the original data with SL4 to make comparisons.

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              relates to

              Task - A task that needs to be done. IGBF-3544 Re-run mature pollen and seedling pipeline with SL4 using data newly submitted to SRA

              • Major - Major loss of function.
              • Closed

                Activity

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                Mdavis4290 Molly Davis created issue -
                Mdavis4290 Molly Davis made changes -
                Field Original Value New Value
                Epic Link IGBF-2993 [ 21429 ]
                Mdavis4290 Molly Davis made changes -
                Link This issue relates to IGBF-3544 [ IGBF-3544 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 4 [ 188 ] Spring 4, Spring 5 [ 188, 189 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                Mdavis4290 Molly Davis made changes -
                Sprint Spring 4, Spring 5 [ 188, 189 ] Spring 4 [ 188 ]
                Mdavis4290 Molly Davis made changes -
                Sprint Spring 4 [ 188 ] Spring 4, Spring 9 [ 188, 193 ]
                Mdavis4290 Molly Davis made changes -
                Sprint Spring 4, Spring 9 [ 188, 193 ] Spring 4, Spring 10 [ 188, 194 ]
                Mdavis4290 Molly Davis made changes -
                Sprint Spring 4, Spring 10 [ 188, 194 ] Spring 4 [ 188 ]
                Mdavis4290 Molly Davis made changes -
                Sprint Spring 4 [ 188 ] Spring 4, Spring 10 [ 188, 194 ]
                Mdavis4290 Molly Davis made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                Mdavis4290 Molly Davis made changes -
                Sprint Spring 4, Spring 10 [ 188, 194 ] Spring 4 [ 188 ]

                  People

                  • Assignee:
                    Mdavis4290 Molly Davis
                    Reporter:
                    Mdavis4290 Molly Davis
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                    Dates

                    • Created:
                      Updated: