Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:3
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Epic Link:
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Sprint:Spring 4, Spring 5, Spring 6, Spring 7, Spring 8
Description
Now that we have used the pipeline multiple times successfully, it is time to write a paper about every step in detail. This is to ensure that methods are documented and not forgotten. The pipeline would include submitting data to SRA, using the data from SRA, running the data through nextflow nfcore, sanity check the data with original data, submit data to IGB quick load.
Attachments
Issue Links
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- To-Do
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2993 [ 21429 ] |
| Rank | Ranked higher |
| Summary | Create a document that describes the pipeline | Create a pipeline document |
| Summary | Create a pipeline document | Create a Pipeline Document |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Spring 4 [ 188 ] | Spring 4, Spring 5 [ 188, 189 ] |
| Rank | Ranked higher |
| Summary | Create a Pipeline Document | Create a Draft Pipeline Document |
| Rank | Ranked higher |
| Summary | Create a Draft Pipeline Document | Create a Draft 1 Pipeline Document |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Molly Davis [ molly ] |
| Sprint | Spring 4, Spring 5 [ 188, 189 ] | Spring 4, Spring 5, Spring 6 [ 188, 189, 190 ] |
| Rank | Ranked higher |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Molly Davis [ molly ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Molly Davis [ molly ] | Ann Loraine [ aloraine ] |
| Sprint | Spring 4, Spring 5, Spring 6 [ 188, 189, 190 ] | Spring 4, Spring 5, Spring 6, Spring 7 [ 188, 189, 190, 191 ] |
| Rank | Ranked higher |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | To-Do [ 10305 ] |
| Assignee | Ann Loraine [ aloraine ] | Molly Davis [ molly ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Rank | Ranked higher |
| Assignee | Molly Davis [ molly ] | Robert Reid [ robertreid ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Robert Reid [ robertreid ] | Ann Loraine [ aloraine ] |
| Sprint | Spring 4, Spring 5, Spring 6, Spring 7 [ 188, 189, 190, 191 ] | Spring 4, Spring 5, Spring 6, Spring 7, Spring 8 [ 188, 189, 190, 191, 192 ] |
| Rank | Ranked higher |
| Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Ann Loraine [ aloraine ] | Robert Reid [ robertreid ] |
| Assignee | Robert Reid [ robertreid ] | Molly Davis [ molly ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |