Details
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Type:
Epic
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Epic Name:Draft and submit abstracts for 2024 conferences
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Story Points:1.5
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Sprint:Spring 7, Spring 8, Spring 9, Spring 10, Summer 1, Summer 2, Summer 3, Summer 4, Summer 5, Summer 6, Summer 7, Fall 1, Fall 2, Fall 3
Description
There are a number of conferences coming up that have abstract submission deadlines in April. Here is a table summarizing which conferences Dr. Loraine, Dr. Freese, and Paige are hoping to attend this year/early next year and when they need to submit abstracts by (you can also find this information in the spreadsheet linked here):
| Conference Name | Date | Location | Who's Going | Abstract Deadline | Link to Website |
|---|---|---|---|---|---|
| GCC | Jun 24, 2024 | Brno, Czech Republic | PK? | Apr 15, 2024 | Link |
| ISMB (Joint with BOSC) | Jul 12, 2024 | Montreal, CAN | AL/PK? | Apr 19, 2024 (AL may have already applied) | Link |
| SDB | Jul 14, 2024 | Atlanta, GA | NF/PK | Apr 10, 2024 | Link |
| BOSC (Joint with ISMB) | Jul 15, 2024 | Montreal, CAN | AL | Apr 19, 2024 | Link |
| ICAR | Jul 15, 2024 | San Diego, CA | PK | Apr 15, 2024 | Link |
| ASHG | Nov 5, 2024 | Denver, CO | NF/PK | Jun 5, 2024 | Link |
| PSB | Jan 4, 2025 | Hawaii | NF/PK? | Aug 1, 2024 | Link |
| PAG | Jan 10, 2025 | San Diego, CA | PK | Unknown | Link |
Task: Make it a priority to submit abstracts for the first three conferences listed here (Galaxy, ISMB, and SDB). Then, submit abstracts for the remaining conferences.
Attachments
Issue Links
- relates to
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IGBF-3706 Draft and submit abstract for 2024 ASHG
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2809 [ 19325 ] |
| Rank | Ranked higher |
| Summary | Draft abstracts for upcoming conferences | Draft and submit abstracts for upcoming conferences |
| Rank | Ranked higher |
| Attachment | ICAR2024_Abstract_Proforma_.docx [ 18310 ] |
| Comment |
[ Galaxy Community Conference - Abstract Submission Guidelines:
* *Limited to 500 words.* Abstract submission is a web form so no graphics or references are to be included. * *Relevance to Galaxy.* Does your work use, describe, extend, deploy, benchmark, etc., some part of the Galaxy ecosystem? * *Compelling.* Is the work compelling? Will GCC2024 participants find your presentation interesting? Does the abstract describe novel work, interesting results, improvements, lessons learned, and so on. * *Open Source / Open Access.* Not all presented work / resources must be open source / open access, but if it isn't, then you need a compelling reason why it isn't. For example, if you have implemented Galaxy in a company, behind a firewall, then your presentation should focus on the lessons you learned, and any contributions that were made back into the ecosystem. An abstract that merely highlights an inaccessible resource is not compelling. * *You will need an Oxford Abstracts account.* We are using Oxford Abstracts portal for abstract submissions and they require a (free) account be created with them. Instructions on how to do so are available on their website. ] |
| Description |
There are a number of conferences coming up that have abstract submission deadlines in April. Here is a table summarizing which conferences Dr. Loraine, Dr. Freese, and Paige are hoping to attend this year/early next year and when they need to submit abstracts by (you can also find this information in the [spreadsheet|https://docs.google.com/spreadsheets/d/13FZscG8opUlZpHh3A2_Tz0MdQ9R5IzNw8LCyBv7edr4/edit?usp=sharing] linked here):
||Conference Name||Date||Location||Who's Going||Abstract Deadline||Link to Website|| |Galaxy Community Conference|Jun 24, 2024|Brno, CZE|PK|Apr 15, 2024|[Link|https://galaxyproject.org/events/gcc2024/]| |ISMB|Jul 12, 2024|Montreal, CAN|AL/PK?|Apr 19, 2024 (AL may have already applied)|[Link|https://www.iscb.org/ismb2024/home]| |SDB|Jul 14, 2024|Atlanta, GA|NF/PK|Apr 10, 2024|[Link|https://www.sdbonline.org/2024mtg]| |ICAR|Jul 15, 2024|San Diego, CA|PK|Apr 15, 2024|[Link|https://globalplantcouncil.org/event/icar2024/]| |ASHG|Nov 5, 2024|Denver, CO|NF/PK|Jun 5, 2024|[Link|https://www.ashg.org/meetings/2024meeting/interactive-workshops/]| |PSB|Jan 4, 2025|Hawaii|NF/PK?|Aug 1, 2025|[Link|https://psb.stanford.edu/]| |PAG|Jan 10, 2025|San Diego, CA|PK|Unknown|[Link|https://www.intlpag.org/31/abstracts/workshop-abstracts]| *Task:* Make it a priority to submit abstracts for the first three conferences listed here (Galaxy, ISMB, and SDB). Then, submit abstracts for the remaining conferences. |
There are a number of conferences coming up that have abstract submission deadlines in April. Here is a table summarizing which conferences Dr. Loraine, Dr. Freese, and Paige are hoping to attend this year/early next year and when they need to submit abstracts by (you can also find this information in the [spreadsheet|https://docs.google.com/spreadsheets/d/13FZscG8opUlZpHh3A2_Tz0MdQ9R5IzNw8LCyBv7edr4/edit?usp=sharing] linked here):
||Conference Name||Date||Location||Who's Going||Abstract Deadline||Link to Website|| |ISMB|Jul 12, 2024|Montreal, CAN|AL/PK?|Apr 19, 2024 (AL may have already applied)|[Link|https://www.iscb.org/ismb2024/home]| |SDB|Jul 14, 2024|Atlanta, GA|NF/PK|Apr 10, 2024|[Link|https://www.sdbonline.org/2024mtg]| |ICAR|Jul 15, 2024|San Diego, CA|PK|Apr 15, 2024|[Link|https://globalplantcouncil.org/event/icar2024/]| |ASHG|Nov 5, 2024|Denver, CO|NF/PK|Jun 5, 2024|[Link|https://www.ashg.org/meetings/2024meeting/interactive-workshops/]| |PSB|Jan 4, 2025|Hawaii|NF/PK?|Aug 1, 2025|[Link|https://psb.stanford.edu/]| |PAG|Jan 10, 2025|San Diego, CA|PK|Unknown|[Link|https://www.intlpag.org/31/abstracts/workshop-abstracts]| *Task:* Make it a priority to submit abstracts for the first three conferences listed here (Galaxy, ISMB, and SDB). Then, submit abstracts for the remaining conferences. |
| Description |
There are a number of conferences coming up that have abstract submission deadlines in April. Here is a table summarizing which conferences Dr. Loraine, Dr. Freese, and Paige are hoping to attend this year/early next year and when they need to submit abstracts by (you can also find this information in the [spreadsheet|https://docs.google.com/spreadsheets/d/13FZscG8opUlZpHh3A2_Tz0MdQ9R5IzNw8LCyBv7edr4/edit?usp=sharing] linked here):
||Conference Name||Date||Location||Who's Going||Abstract Deadline||Link to Website|| |ISMB|Jul 12, 2024|Montreal, CAN|AL/PK?|Apr 19, 2024 (AL may have already applied)|[Link|https://www.iscb.org/ismb2024/home]| |SDB|Jul 14, 2024|Atlanta, GA|NF/PK|Apr 10, 2024|[Link|https://www.sdbonline.org/2024mtg]| |ICAR|Jul 15, 2024|San Diego, CA|PK|Apr 15, 2024|[Link|https://globalplantcouncil.org/event/icar2024/]| |ASHG|Nov 5, 2024|Denver, CO|NF/PK|Jun 5, 2024|[Link|https://www.ashg.org/meetings/2024meeting/interactive-workshops/]| |PSB|Jan 4, 2025|Hawaii|NF/PK?|Aug 1, 2025|[Link|https://psb.stanford.edu/]| |PAG|Jan 10, 2025|San Diego, CA|PK|Unknown|[Link|https://www.intlpag.org/31/abstracts/workshop-abstracts]| *Task:* Make it a priority to submit abstracts for the first three conferences listed here (Galaxy, ISMB, and SDB). Then, submit abstracts for the remaining conferences. |
There are a number of conferences coming up that have abstract submission deadlines in April. Here is a table summarizing which conferences Dr. Loraine, Dr. Freese, and Paige are hoping to attend this year/early next year and when they need to submit abstracts by (you can also find this information in the [spreadsheet|https://docs.google.com/spreadsheets/d/13FZscG8opUlZpHh3A2_Tz0MdQ9R5IzNw8LCyBv7edr4/edit?usp=sharing] linked here):
||Conference Name||Date||Location||Who's Going||Abstract Deadline||Link to Website|| |ISMB|Jul 12, 2024|Montreal, CAN|AL/PK?|Apr 19, 2024 (AL may have already applied)|[Link|https://www.iscb.org/ismb2024/home]| |SDB|Jul 14, 2024|Atlanta, GA|NF/PK|Apr 10, 2024|[Link|https://www.sdbonline.org/2024mtg]| |ICAR|Jul 15, 2024|San Diego, CA|PK|Apr 15, 2024|[Link|https://icar2024.weebly.com/]| |ASHG|Nov 5, 2024|Denver, CO|NF/PK|Jun 5, 2024|[Link|https://www.ashg.org/meetings/2024meeting/interactive-workshops/]| |PSB|Jan 4, 2025|Hawaii|NF/PK?|Aug 1, 2025|[Link|https://psb.stanford.edu/]| |PAG|Jan 10, 2025|San Diego, CA|PK|Unknown|[Link|https://www.intlpag.org/31/abstracts/workshop-abstracts]| *Task:* Make it a priority to submit abstracts for the first three conferences listed here (Galaxy, ISMB, and SDB). Then, submit abstracts for the remaining conferences. |
| Assignee | Nowlan Freese [ nfreese ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Description |
There are a number of conferences coming up that have abstract submission deadlines in April. Here is a table summarizing which conferences Dr. Loraine, Dr. Freese, and Paige are hoping to attend this year/early next year and when they need to submit abstracts by (you can also find this information in the [spreadsheet|https://docs.google.com/spreadsheets/d/13FZscG8opUlZpHh3A2_Tz0MdQ9R5IzNw8LCyBv7edr4/edit?usp=sharing] linked here):
||Conference Name||Date||Location||Who's Going||Abstract Deadline||Link to Website|| |ISMB|Jul 12, 2024|Montreal, CAN|AL/PK?|Apr 19, 2024 (AL may have already applied)|[Link|https://www.iscb.org/ismb2024/home]| |SDB|Jul 14, 2024|Atlanta, GA|NF/PK|Apr 10, 2024|[Link|https://www.sdbonline.org/2024mtg]| |ICAR|Jul 15, 2024|San Diego, CA|PK|Apr 15, 2024|[Link|https://icar2024.weebly.com/]| |ASHG|Nov 5, 2024|Denver, CO|NF/PK|Jun 5, 2024|[Link|https://www.ashg.org/meetings/2024meeting/interactive-workshops/]| |PSB|Jan 4, 2025|Hawaii|NF/PK?|Aug 1, 2025|[Link|https://psb.stanford.edu/]| |PAG|Jan 10, 2025|San Diego, CA|PK|Unknown|[Link|https://www.intlpag.org/31/abstracts/workshop-abstracts]| *Task:* Make it a priority to submit abstracts for the first three conferences listed here (Galaxy, ISMB, and SDB). Then, submit abstracts for the remaining conferences. |
There are a number of conferences coming up that have abstract submission deadlines in April. Here is a table summarizing which conferences Dr. Loraine, Dr. Freese, and Paige are hoping to attend this year/early next year and when they need to submit abstracts by (you can also find this information in the [spreadsheet|https://docs.google.com/spreadsheets/d/13FZscG8opUlZpHh3A2_Tz0MdQ9R5IzNw8LCyBv7edr4/edit?usp=sharing] linked here):
||Conference Name||Date||Location||Who's Going||Abstract Deadline||Link to Website|| |GCC|Jun 24, 2024|Brno, Czech Republic|PK?|Apr 15, 2024|[Link|https://galaxyproject.org/events/gcc2023/]| |ISMB|Jul 12, 2024|Montreal, CAN|AL/PK?|Apr 19, 2024 (AL may have already applied)|[Link|https://www.iscb.org/ismb2024/home]| |SDB|Jul 14, 2024|Atlanta, GA|NF/PK|Apr 10, 2024|[Link|https://www.sdbonline.org/2024mtg]| |ICAR|Jul 15, 2024|San Diego, CA|PK|Apr 15, 2024|[Link|https://icar2024.weebly.com/]| |ASHG|Nov 5, 2024|Denver, CO|NF/PK|Jun 5, 2024|[Link|https://www.ashg.org/meetings/2024meeting/interactive-workshops/]| |PSB|Jan 4, 2025|Hawaii|NF/PK?|Aug 1, 2025|[Link|https://psb.stanford.edu/]| |PAG|Jan 10, 2025|San Diego, CA|PK|Unknown|[Link|https://www.intlpag.org/31/abstracts/workshop-abstracts]| *Task:* Make it a priority to submit abstracts for the first three conferences listed here (Galaxy, ISMB, and SDB). Then, submit abstracts for the remaining conferences. |
| Description |
There are a number of conferences coming up that have abstract submission deadlines in April. Here is a table summarizing which conferences Dr. Loraine, Dr. Freese, and Paige are hoping to attend this year/early next year and when they need to submit abstracts by (you can also find this information in the [spreadsheet|https://docs.google.com/spreadsheets/d/13FZscG8opUlZpHh3A2_Tz0MdQ9R5IzNw8LCyBv7edr4/edit?usp=sharing] linked here):
||Conference Name||Date||Location||Who's Going||Abstract Deadline||Link to Website|| |GCC|Jun 24, 2024|Brno, Czech Republic|PK?|Apr 15, 2024|[Link|https://galaxyproject.org/events/gcc2023/]| |ISMB|Jul 12, 2024|Montreal, CAN|AL/PK?|Apr 19, 2024 (AL may have already applied)|[Link|https://www.iscb.org/ismb2024/home]| |SDB|Jul 14, 2024|Atlanta, GA|NF/PK|Apr 10, 2024|[Link|https://www.sdbonline.org/2024mtg]| |ICAR|Jul 15, 2024|San Diego, CA|PK|Apr 15, 2024|[Link|https://icar2024.weebly.com/]| |ASHG|Nov 5, 2024|Denver, CO|NF/PK|Jun 5, 2024|[Link|https://www.ashg.org/meetings/2024meeting/interactive-workshops/]| |PSB|Jan 4, 2025|Hawaii|NF/PK?|Aug 1, 2025|[Link|https://psb.stanford.edu/]| |PAG|Jan 10, 2025|San Diego, CA|PK|Unknown|[Link|https://www.intlpag.org/31/abstracts/workshop-abstracts]| *Task:* Make it a priority to submit abstracts for the first three conferences listed here (Galaxy, ISMB, and SDB). Then, submit abstracts for the remaining conferences. |
There are a number of conferences coming up that have abstract submission deadlines in April. Here is a table summarizing which conferences Dr. Loraine, Dr. Freese, and Paige are hoping to attend this year/early next year and when they need to submit abstracts by (you can also find this information in the [spreadsheet|https://docs.google.com/spreadsheets/d/13FZscG8opUlZpHh3A2_Tz0MdQ9R5IzNw8LCyBv7edr4/edit?usp=sharing] linked here):
||Conference Name||Date||Location||Who's Going||Abstract Deadline||Link to Website|| |GCC|Jun 24, 2024|Brno, Czech Republic|PK?|Apr 15, 2024|[Link|https://galaxyproject.org/events/gcc2024/]| |ISMB|Jul 12, 2024|Montreal, CAN|AL/PK?|Apr 19, 2024 (AL may have already applied)|[Link|https://www.iscb.org/ismb2024/home]| |SDB|Jul 14, 2024|Atlanta, GA|NF/PK|Apr 10, 2024|[Link|https://www.sdbonline.org/2024mtg]| |ICAR|Jul 15, 2024|San Diego, CA|PK|Apr 15, 2024|[Link|https://icar2024.weebly.com/]| |ASHG|Nov 5, 2024|Denver, CO|NF/PK|Jun 5, 2024|[Link|https://www.ashg.org/meetings/2024meeting/interactive-workshops/]| |PSB|Jan 4, 2025|Hawaii|NF/PK?|Aug 1, 2025|[Link|https://psb.stanford.edu/]| |PAG|Jan 10, 2025|San Diego, CA|PK|Unknown|[Link|https://www.intlpag.org/31/abstracts/workshop-abstracts]| *Task:* Make it a priority to submit abstracts for the first three conferences listed here (Galaxy, ISMB, and SDB). Then, submit abstracts for the remaining conferences. |
| Attachment | 2024_SDB_submission_FINAL.pdf [ 18322 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Description |
There are a number of conferences coming up that have abstract submission deadlines in April. Here is a table summarizing which conferences Dr. Loraine, Dr. Freese, and Paige are hoping to attend this year/early next year and when they need to submit abstracts by (you can also find this information in the [spreadsheet|https://docs.google.com/spreadsheets/d/13FZscG8opUlZpHh3A2_Tz0MdQ9R5IzNw8LCyBv7edr4/edit?usp=sharing] linked here):
||Conference Name||Date||Location||Who's Going||Abstract Deadline||Link to Website|| |GCC|Jun 24, 2024|Brno, Czech Republic|PK?|Apr 15, 2024|[Link|https://galaxyproject.org/events/gcc2024/]| |ISMB|Jul 12, 2024|Montreal, CAN|AL/PK?|Apr 19, 2024 (AL may have already applied)|[Link|https://www.iscb.org/ismb2024/home]| |SDB|Jul 14, 2024|Atlanta, GA|NF/PK|Apr 10, 2024|[Link|https://www.sdbonline.org/2024mtg]| |ICAR|Jul 15, 2024|San Diego, CA|PK|Apr 15, 2024|[Link|https://icar2024.weebly.com/]| |ASHG|Nov 5, 2024|Denver, CO|NF/PK|Jun 5, 2024|[Link|https://www.ashg.org/meetings/2024meeting/interactive-workshops/]| |PSB|Jan 4, 2025|Hawaii|NF/PK?|Aug 1, 2025|[Link|https://psb.stanford.edu/]| |PAG|Jan 10, 2025|San Diego, CA|PK|Unknown|[Link|https://www.intlpag.org/31/abstracts/workshop-abstracts]| *Task:* Make it a priority to submit abstracts for the first three conferences listed here (Galaxy, ISMB, and SDB). Then, submit abstracts for the remaining conferences. |
There are a number of conferences coming up that have abstract submission deadlines in April. Here is a table summarizing which conferences Dr. Loraine, Dr. Freese, and Paige are hoping to attend this year/early next year and when they need to submit abstracts by (you can also find this information in the [spreadsheet|https://docs.google.com/spreadsheets/d/13FZscG8opUlZpHh3A2_Tz0MdQ9R5IzNw8LCyBv7edr4/edit?usp=sharing] linked here):
||Conference Name||Date||Location||Who's Going||Abstract Deadline||Link to Website|| |GCC|Jun 24, 2024|Brno, Czech Republic|PK?|Apr 15, 2024|[Link|https://galaxyproject.org/events/gcc2024/]| |ISMB (Joint with BOSC)|Jul 12, 2024|Montreal, CAN|AL/PK?|Apr 19, 2024 (AL may have already applied)|[Link|https://www.iscb.org/ismb2024/home]| |SDB|Jul 14, 2024|Atlanta, GA|NF/PK|Apr 10, 2024|[Link|https://www.sdbonline.org/2024mtg]| |BOSC (Joint with ISMB)|Jul 15, 2024|Montreal, CAN|AL|Apr 19, 2024|[Link|https://www.open-bio.org/events/bosc-2024/]| |ICAR|Jul 15, 2024|San Diego, CA|PK|Apr 15, 2024|[Link|https://icar2024.weebly.com/]| |ASHG|Nov 5, 2024|Denver, CO|NF/PK|Jun 5, 2024|[Link|https://www.ashg.org/meetings/2024meeting/interactive-workshops/]| |PSB|Jan 4, 2025|Hawaii|NF/PK?|Aug 1, 2025|[Link|https://psb.stanford.edu/]| |PAG|Jan 10, 2025|San Diego, CA|PK|Unknown|[Link|https://www.intlpag.org/31/abstracts/workshop-abstracts]| *Task:* Make it a priority to submit abstracts for the first three conferences listed here (Galaxy, ISMB, and SDB). Then, submit abstracts for the remaining conferences. |
| Sprint | Spring 7 [ 191 ] | Spring 7, Spring 8 [ 191, 192 ] |
| Rank | Ranked higher |
Request for Nowlan Freese and/or Paige Kulzer
- Let's make this ticket into an epic.
- Let's put the related tickets into this new epic.
- Let's move all comments for specific abstracts and conferences into separate tickets for those conferences.
I think we should do this because this ticket will not close for weeks and weeks because it will take weeks and weeks for us to draft and submit abstracts for all the upcoming conferences listed.
| Description |
There are a number of conferences coming up that have abstract submission deadlines in April. Here is a table summarizing which conferences Dr. Loraine, Dr. Freese, and Paige are hoping to attend this year/early next year and when they need to submit abstracts by (you can also find this information in the [spreadsheet|https://docs.google.com/spreadsheets/d/13FZscG8opUlZpHh3A2_Tz0MdQ9R5IzNw8LCyBv7edr4/edit?usp=sharing] linked here):
||Conference Name||Date||Location||Who's Going||Abstract Deadline||Link to Website|| |GCC|Jun 24, 2024|Brno, Czech Republic|PK?|Apr 15, 2024|[Link|https://galaxyproject.org/events/gcc2024/]| |ISMB (Joint with BOSC)|Jul 12, 2024|Montreal, CAN|AL/PK?|Apr 19, 2024 (AL may have already applied)|[Link|https://www.iscb.org/ismb2024/home]| |SDB|Jul 14, 2024|Atlanta, GA|NF/PK|Apr 10, 2024|[Link|https://www.sdbonline.org/2024mtg]| |BOSC (Joint with ISMB)|Jul 15, 2024|Montreal, CAN|AL|Apr 19, 2024|[Link|https://www.open-bio.org/events/bosc-2024/]| |ICAR|Jul 15, 2024|San Diego, CA|PK|Apr 15, 2024|[Link|https://icar2024.weebly.com/]| |ASHG|Nov 5, 2024|Denver, CO|NF/PK|Jun 5, 2024|[Link|https://www.ashg.org/meetings/2024meeting/interactive-workshops/]| |PSB|Jan 4, 2025|Hawaii|NF/PK?|Aug 1, 2025|[Link|https://psb.stanford.edu/]| |PAG|Jan 10, 2025|San Diego, CA|PK|Unknown|[Link|https://www.intlpag.org/31/abstracts/workshop-abstracts]| *Task:* Make it a priority to submit abstracts for the first three conferences listed here (Galaxy, ISMB, and SDB). Then, submit abstracts for the remaining conferences. |
There are a number of conferences coming up that have abstract submission deadlines in April. Here is a table summarizing which conferences Dr. Loraine, Dr. Freese, and Paige are hoping to attend this year/early next year and when they need to submit abstracts by (you can also find this information in the [spreadsheet|https://docs.google.com/spreadsheets/d/13FZscG8opUlZpHh3A2_Tz0MdQ9R5IzNw8LCyBv7edr4/edit?usp=sharing] linked here):
||Conference Name||Date||Location||Who's Going||Abstract Deadline||Link to Website|| |GCC|Jun 24, 2024|Brno, Czech Republic|PK?|Apr 15, 2024|[Link|https://galaxyproject.org/events/gcc2024/]| |ISMB (Joint with BOSC)|Jul 12, 2024|Montreal, CAN|AL/PK?|Apr 19, 2024 (AL may have already applied)|[Link|https://www.iscb.org/ismb2024/home]| |SDB|Jul 14, 2024|Atlanta, GA|NF/PK|Apr 10, 2024|[Link|https://www.sdbonline.org/2024mtg]| |BOSC (Joint with ISMB)|Jul 15, 2024|Montreal, CAN|AL|Apr 19, 2024|[Link|https://www.open-bio.org/events/bosc-2024/]| |ICAR|Jul 15, 2024|San Diego, CA|PK|Apr 15, 2024|[Link|https://icar2024.weebly.com/]| |ASHG|Nov 5, 2024|Denver, CO|NF/PK|Jun 5, 2024|[Link|https://www.ashg.org/meetings/2024meeting/interactive-workshops/]| |PSB|Jan 4, 2025|Hawaii|NF/PK?|Aug 1, 2024|[Link|https://psb.stanford.edu/]| |PAG|Jan 10, 2025|San Diego, CA|PK|Unknown|[Link|https://www.intlpag.org/31/abstracts/workshop-abstracts]| *Task:* Make it a priority to submit abstracts for the first three conferences listed here (Galaxy, ISMB, and SDB). Then, submit abstracts for the remaining conferences. |
| Comment |
[ SDB Conference - Abstract Submission Guidelines:
* Save your entire abstract as a text file (.txt) to remove all formatting before starting your submission. * The entire abstract must be one paragraph only. * There is a 2000 character limit (with spaces) for the abstract text. * Include any funding sources in the last sentence of your abstract. * DO NOT copy and paste directly from your word processing program. Save your entire abstract as a text file (.txt) to remove all formatting and copy that plain text. It costs $195 to become a full member with SDB, so we could pay $750 for one non-member to go and present a poster, or we can pay $790 for a membership+attendance and try to apply for a talk, though we don't slot well into any of the categories for the talks. [~ann.loraine], which (if any) of these might we be a good fit for? # Developmental Bases of Diseases # Developmental Mechanisms for # Environmental Adaptation # Early Embryogenesis & Reproductive Biology # Engineering Development & Synthetic Systems # Epigenetic Memory and Cell Lineage # Evolutionary Conservation, Divergence, and Regulatory Networks # Metabolic Regulation and Development # Morphogenesis and Pattern Formation # Stem Cells and Regeneration *Update from scrum 4/5/24*: Dr. Loraine would like us to present a poster rather than a talk. We should apply for Poster option #7 (Emerging model organisms) and present on tardigrades. ] |
| Comment | [ Let's definitely plan on attending the SBD conference in Atlanta. ] |
| Comment |
[ *SDB*
Current options are to either submit for a [poster|https://www.sdbonline.org/uploads/files/2024AbstractSubmissionInstructions.pdf] or pay to do a [workshop:https://www.sdbonline.org/uploads/files/SDB83rdAnnualMeetingProspectus.pdf]. [~nfreese] - will email Ida Chow to determine if the cost of the workshop includes registration, or if we even need to register? If registration is included, then cost wise it would make sense to do workshop. If not, then send one person to do a poster. ] |
| Comment |
[ Regarding SDB:
* I think we should submit a poster abstract on Wednesday and decide later on if we will also do more. Regarding Galaxy Community Conferece: * I think we should submit an abstract and decide later if we will go or not. The abstractr deadline is April 15. The conference itself is June 24 (around then). I know I had said that the GCC is too expensive, but I'm reconsidering since the chance to connect with more "power users" and the Galaxy community could be worth it. However, we need to make sure that IGB still actually works well with Galaxy. i would recommend [~pkulzer] and also the rest of us look again at Galaxy and make sure IGB still works with it! [~pkulzer] - do you have a current passport? ] |
| Comment |
[ SDB abstract draft:
The tardigrade species Hypsibius exemplaris is an emerging model system for understanding evolution of animal development. Its small genome size, rapid generation time, transparent embryos and ease of cultivation in laboratory settings make this microscopic invertebrate amenable to experimentation using high-throughput sequencing methods such as RNA sequencing (RNA-Seq). However, advanced genomics visualization resources for Hypsibius and other tardigrade species are lacking in comparison to other invertebrates important in developmental biology. To address this lack, we developed a new genome browser resource for tardigrade using the Integrated Genome Browser, a genome browser designed for visualization of functional genomics data sets, especially RNA-Seq expression data from emerging model systems with incomplete genome assemblies. Using this new resource, researchers can perform differentially expression analysis visually, comparing publicly available RNA-Seq data sets harvested from the Sequence Read Archive. ] |
| Comment | [ A note for [~nfreese] and [~pkulzer]: I can submit the abstract this evening or tomorrow. If possible, could you take a look at the abstract draft today and let me know if you have any suggestions or concerns about it? ] |
| Comment | [ [~ann.loraine] - Paige has made edits to the abstract here: https://docs.google.com/document/d/1hERYVbKeZOts4j1sJ58PUCGNihvnRdkxTkyyPjJRT00/edit?usp=sharing ] |
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[ Here's that final, edited version:
*Presentation Title:* A new genome visualization resource for exploring and visually analyzing RNA-Seq gene expression data for tardigrades (_Hypsibius exemplaris_ and _Ramazzottius varieornatus_) *Abstract (one paragraph, 2000 character limit, any funding sources to be included in the last sentence):* The tardigrade species _Hypsibius exemplaris_ is an emerging model system for understanding the evolution of animal development. Its transparent embryos, rapid generation time, ease of cultivation in laboratory settings, and small genome size make this microscopic invertebrate amenable to genome-scale assays such as RNA-Seq gene expression analysis. Other tardigrade species, including _Ramazzottius varieornatus_, offer models for studying resilience in the face of extreme environmental stresses, such as ionizing radiation. However, advanced genomics visualization resources for tardigrade species are lacking in comparison to other invertebrates important in developmental biology and stress resilience studies. To address this, we developed a new genome browser resource for tardigrades using the Integrated Genome Browser, an open-source genome browser well-suited for visual analysis of functional genomics data sets, especially data from scaffold (incomplete) genome assemblies like those currently available for tardigrades. This new resource contains published RNA-Seq datasets downloaded from public archives as original sequence data and then re-aligned to tardigrade genome assemblies downloaded from Genbank. The re-processed data includes sequence alignments, useful for comparing genetic differences across species, and scaled coverage graphs, useful for observing differentially expressed genes between experimental samples. In addition, researchers can use the browser to visualize their own data alongside the public, re-processed data, making it easier to interpret their work and understand its significance and impact. The Integrated Genome Browser is freely-available from bioviz.org. An award from NIH NIGMS (R35GM139609) provided funding. ] |
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[ Submitted abstract for SDB: [^2024_SDB_submission_FINAL.pdf]
Note: Early Registration Deadline: May 15, 2024 ] |
| Attachment | 2024_SDB_submission_FINAL.pdf [ 18322 ] |
| Comment |
[ ICAR Conference - Abstract Submission Guidelines:
* *Maximum of 300 words* (excluding: title, authors, & institutions, & optional references) * Use the template attached to this ticket to create and upload an abstract * *April 12* - deadline to become a member* to get the member early bird fee ([LINK|https://www.arabidopsiscommunity.org/join-ac]) [~ann.loraine], similar to SDB, there's a number of options for workshops (marked with a "WK", workshops held before the conference are marked "MWK") and talks for us to choose from. Which (if any) do you think we might be able to slot into? *Workshop/Talk options:* # A Systems Approach to Decipher Plant Cell Wall Dynamics # Adaptations to Extreme Climate in Arabidopsis Extremophyte Relatives # Arabidopsis Beyond Arabidopsis - Towards Generalisable Principles in Biology # Cell Fate Control and Organogenesis: Towards Understanding and Imaging Complex Tissues # Cell-type Specific Responses for Plant Resilience to Stress # Chemical Genetics in Arabidopsis Research: Recent advances and Applications (WK) # Chromatin at Single-cell and Single-molecule Resolution # Deciphering the Secrets of Microbiomes in Promoting Stress Resilience in Plants – a Strategy for Achieving Agricultural Sustainability # Dynamic Plant Cells: Organelle Dynamics and Cell Division During Development # Environmental and Tissue-Specific Regulation of Plant Circadian Rhythms # Epigenetics # Epigenome and Epitranscriptome in Environmental Stress Signaling and Memory # Evolutionary Plant Systems Biology for Climate Adaptation (WK) # From Arabidopsis to Crops: Unveiling the Secrets of Elemental Nutrient Uptake, Allocation, and Biofortification (MWK) # From Perception to Memory: How Plants Adapt to Climate Change # Genomic Features and Mechanisms of Mutation (WK) # Hormonal Influence on Plant Form # Light and Warm Temperature Crosstalk in Plants: a Concerted Response to Optimise Growth and Fitness # Long-distance Signaling in Times of Stress # Mobile DNA and Genome Plasticity (WK) # Molecular Mechanisms of Hormone Function # More than Growth: Plant Development in Plant-Biotic Interactions # New Methods to Accelerate Plant Synthetic Biology (MWK) # Phenotypic Plasticity in Arabidopsis thaliana - Mechanisms and Evolution # Pushing the Boundaries of Single-cell omics Technologies and Applications # Quantitative Proteomics Applications to Dissect Signal Transduction in Arabidopsis # RNA Modifications and Their Role in Plants # Robustness and Resilience: Surviving a Changing Climate # Seed Biology: Development, Germination and Dormancy # Stress Combination: A New Frontier in Plant Sciences # Synthesis and Function of Plant Specialized Metabolites that Regulate Development and # Stress Responses # The Roles of Biomolecular Condensates and Their Interactions with The Membrane System # Tiny Pores With Global Impact (WK) # Translational Research from Arabidopsis to Crop Plants and Beyond # Visualizing the Dynamics of Cell Biology During Plant Development and Environmental Stresses *Poster Options:* # Abiotic Stress # Biotic Interactions # Biotic & Abiotic Stress # Applied/Translational Plant Science # Biochemistry and Metabolism # Cell Biology # Development or Developmental Mechanisms # Education, Outreach, Community Building or Support # Evolution, Ecology, or Population Biology # Epigenetics, Chromatin, and Small RNAs # Hormones/Hormone Biology # New Research Tools, Technology or Resources # Signal Transduction # Systems, Synthetic, and Computational Biology # Other ] |
| Issue Type | Task [ 3 ] | Epic [ 10000 ] |
| Epic Link | IGBF-2809 [ 19325 ] |
| Summary | Draft and submit abstracts for upcoming conferences | Draft and submit abstracts for 2024 conferences |
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Do we want to submit an abstract for ICAR?
| Attachment | ICAR2024_Abstract_Proforma_.docx [ 18310 ] |
| Epic Name | Draft and submit abstracts for 2024 conferences |
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| Sprint | Spring 7, Spring 8 [ 191, 192 ] | Spring 7, Spring 8, Spring 9 [ 191, 192, 193 ] |
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| Sprint | Spring 7, Spring 8, Spring 9 [ 191, 192, 193 ] | Spring 7, Spring 8, Spring 9, Spring 10 [ 191, 192, 193, 194 ] |
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| Sprint | Spring 7, Spring 8, Spring 9, Spring 10 [ 191, 192, 193, 194 ] | Spring 7, Spring 8, Spring 9, Spring 10, Summer 1 [ 191, 192, 193, 194, 195 ] |
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| Sprint | Spring 7, Spring 8, Spring 9, Spring 10, Summer 1 [ 191, 192, 193, 194, 195 ] | Spring 7, Spring 8, Spring 9, Spring 10, Summer 1, Summer 2 [ 191, 192, 193, 194, 195, 196 ] |
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| Sprint | Spring 7, Spring 8, Spring 9, Spring 10, Summer 1, Summer 2 [ 191, 192, 193, 194, 195, 196 ] | Spring 7, Spring 8, Spring 9, Spring 10, Summer 1, Summer 2, Summer 3 [ 191, 192, 193, 194, 195, 196, 197 ] |
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| Sprint | Spring 7, Spring 8, Spring 9, Spring 10, Summer 1, Summer 2, Summer 3 [ 191, 192, 193, 194, 195, 196, 197 ] | Spring 7, Spring 8, Spring 9, Spring 10, Summer 1, Summer 2, Summer 3, Summer 4 [ 191, 192, 193, 194, 195, 196, 197, 198 ] |
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| Sprint | Spring 7, Spring 8, Spring 9, Spring 10, Summer 1, Summer 2, Summer 3, Summer 4 [ 191, 192, 193, 194, 195, 196, 197, 198 ] | Spring 7, Spring 8, Spring 9, Spring 10, Summer 1, Summer 2, Summer 3, Summer 4, Summer 5 [ 191, 192, 193, 194, 195, 196, 197, 198, 199 ] |
| Rank | Ranked higher |
| Sprint | Spring 7, Spring 8, Spring 9, Spring 10, Summer 1, Summer 2, Summer 3, Summer 4, Summer 5 [ 191, 192, 193, 194, 195, 196, 197, 198, 199 ] | Spring 7, Spring 8, Spring 9, Spring 10, Summer 1, Summer 2, Summer 3, Summer 4, Summer 5, Summer 6 [ 191, 192, 193, 194, 195, 196, 197, 198, 199, 200 ] |
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| Sprint | Spring 7, Spring 8, Spring 9, Spring 10, Summer 1, Summer 2, Summer 3, Summer 4, Summer 5, Summer 6 [ 191, 192, 193, 194, 195, 196, 197, 198, 199, 200 ] | Spring 7, Spring 8, Spring 9, Spring 10, Summer 1, Summer 2, Summer 3, Summer 4, Summer 5, Summer 6, Summer 7 [ 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201 ] |
| Rank | Ranked higher |
| Sprint | Spring 7, Spring 8, Spring 9, Spring 10, Summer 1, Summer 2, Summer 3, Summer 4, Summer 5, Summer 6, Summer 7 [ 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201 ] | Spring 7, Spring 8, Spring 9, Spring 10, Summer 1, Summer 2, Summer 3, Summer 4, Summer 5, Summer 6, Summer 7, Fall 1 [ 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202 ] |
| Rank | Ranked higher |
| Sprint | Spring 7, Spring 8, Spring 9, Spring 10, Summer 1, Summer 2, Summer 3, Summer 4, Summer 5, Summer 6, Summer 7, Fall 1 [ 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202 ] | Spring 7, Spring 8, Spring 9, Spring 10, Summer 1, Summer 2, Summer 3, Summer 4, Summer 5, Summer 6, Summer 7, Fall 1, Fall 2 [ 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203 ] |
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| Epic Child | IGBF-3911 [ 23211 ] |
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| Sprint | Spring 7, Spring 8, Spring 9, Spring 10, Summer 1, Summer 2, Summer 3, Summer 4, Summer 5, Summer 6, Summer 7, Fall 1, Fall 2 [ 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203 ] | Spring 7, Spring 8, Spring 9, Spring 10, Summer 1, Summer 2, Summer 3, Summer 4, Summer 5, Summer 6, Summer 7, Fall 1, Fall 2, Fall 3 [ 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204 ] |
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| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Next steps: