Details
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Type:
Documentation
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Status: Pull Request Submitted (View Workflow)
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Priority:
Minor
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Spring 8, Spring 9, Spring 10
Description
In the "Using FindJuctions from the command line" section from the Find Junctions page of the user's guide (linked here), it says, "Follow the instructions to compile FindJunctions and create a "jar" file." However, there are currently no instructions present in the FindJunctions repo on Bitbucket.
Task: Add instructions for how a user can compile FindJunctions and create a "jar" file to the README file in the FindJunctions repo.
Attachments
Issue Links
Activity
Small change request:
- Please remove this repository reference from the POM: http://eos.transvar.org/nexus/content/repositories/freehep-maven/
Raised pull request: https://bitbucket.org/lorainelab/findjunctions/pull-requests/1. Please review and let me know if there are any issues.
I am able to build FindJunctions using mvn and then run the runFJ.sh to produce a bed file. I am also able to create a bed file using the FindJunction_exe.jar.
Ready for pull request.
Thanks Nowlan Freese for finding that out, I missed that -u option when running it from the terminal that's why I was getting the output from the terminal and not from the script. Updated the READMe file and included the script changes as well: https://bitbucket.org/jaya-sravani/findjunctions/branch/IGBF-3679
Change line above to "Build the jar file using maven. See: [ insert link to bitbucket repository here ]."
Updated Ann Loraine. Tested it again, it's working as expected. https://bitbucket.org/lorainelab/findjunctions/pull-requests/1