Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Sprint:Spring 7, Spring 8, Spring 9
Description
Tardigrade - water bear - is an emerging model system for studying how animals can survive in extreme environments.
Although there are a few genome assemblies available for tardigrade species, the assemblies are still very "drafty" - lots of contigs and no chromosome level assemblies.
The annotations are also very "drafty" - not yet fully validated using RNA-Seq or cDNA sequence data.
And yet, researchers are proceeding with studying how tardigrade gene expression responds to changes in environmental conditions, such as the presence or absence of ionizing radiation.
Because IGB offers many features for exploring genome assemblies and annotations that are not yet well-characterized, we could help researchers in these fields a lot by letting them know about IGB and these features.
For this task, develop demonstration materials explaining why and how IGB can help researchers learning about or working with tardigrade genome resources.
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2809 [ 19325 ] |
| Link | This issue relates to IGBF-3684 [ IGBF-3684 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Spring 7 [ 191 ] | Spring 7, Spring 8 [ 191, 192 ] |
| Rank | Ranked higher |
| Sprint | Spring 7, Spring 8 [ 191, 192 ] | Spring 7, Spring 8, Spring 9 [ 191, 192, 193 ] |
| Rank | Ranked higher |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Summary | Create demo materials highlighting tardigrade assembly | Introduce IGB tardigrade assembly support |
| Summary | Introduce IGB tardigrade assembly support | Document and publicize IGB tardigrade assembly support |
| Epic Link | IGBF-2809 [ 19325 ] | IGBF-3778 [ 22997 ] |