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  1. IGB
  2. IGBF-3711

Set up SRA-downloaded Muday datasets in the RNA-Seq Quickload

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          The workshop that we'll be giving at ASPB will be focusing on Gloria Muday's tomato data from her upcoming publication ("Flavonols improve thermotolerance in tomato pollen during germination and tube elongation by maintaining ROS homeostasis").

          Task: Set up the SRA-downloaded dataset (including sequence alignments, coverage graphs, and junction files) in the tomato RNA-Seq Quickload so that we can use that Quickload for the ASPB workshop materials. This will require fixing the ongoing SRA sample labeling problem.

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              relates to

              Organization Issue - IGB manual IGBF-3714 Fix title fields in the SL5 annots.xml file

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3673 Draft key concepts/topics to be covered in the ASPB 2024 workshop

              • Critical - Crashes, loss of data, severe memory leak.
              • Closed

              Task - A task that needs to be done. IGBF-3672 Draft a workshop outline for ASPB 2024

              • Major - Major loss of function.
              • Closed

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                  • Assignee:
                    ann.loraine Ann Loraine
                    Reporter:
                    pkulzer Paige Kulzer
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                      Updated:
                      Resolved: