Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-3712

Improve the gene description for the ARE gene in SL4 and SL5 annotations

        Details

        • Type: Improvement
        • Status: Closed (View Workflow)
        • Priority: Critical
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          The ASPB 2024 workshop will use RNA-Seq data from Dr. Muday's upcoming publication which reports how heat stress-induced gene expression varied between three different tomato varieties.

          Task: Improve the description field in the annotations file to make it as easy as possible to find the ARE locus in both the SL4 and SL5 genome. The ARE gene encodes an enzyme in the flavonoid biosynthetic pathway, so ideally we could search for the enzyme name during the workshop and easily find the ARE locus.

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-3673 Draft key concepts/topics to be covered in the ASPB 2024 workshop

              • Critical - Crashes, loss of data, severe memory leak.
              • Closed

                Activity

                No work has yet been logged on this issue.

                  People

                  • Assignee:
                    ann.loraine Ann Loraine
                    Reporter:
                    pkulzer Paige Kulzer
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: