Details
-
Type:
Task
-
Status: Closed (View Workflow)
-
Priority:
Major
-
Resolution: Done
-
Affects Version/s: None
-
Fix Version/s: None
-
Labels:None
-
Story Points:2
-
Sprint:Spring 9, Summer 2, Summer 3, Summer 4, Summer 6
Description
The genomic pipeline for downloading and processing tomato data has been well documented, but it includes a version of Nextflow which has recently been superseded. Now that we're working on setting up tardigrade quickloads, we should ideally be adapting this pipeline to use the newest version of Nextflow. This pipeline will likely be shared with the Goldstein lab as part of our outreach efforts.
Task: Document the genomic pipeline for downloading and processing tardigrade RNA-Seq data with the newest version of Nextflow. Ensure that it is easy to understand (i.e., keep the Goldstein lab in mind as a target audience).