Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Minor
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Spring 10, Summer 1
Description
The goal here is to test both Trinity and the Blat scripts from our reference free alignment pipeline.
There are 4 Trinity jobs.
There are 4 blat jobs.
To test this, Brandon will tackle running these scripts to see if he can recreate the results.
Need to decide a test area.
The scripts reside on the cluster at the following location:
/projects/tomato_genome/fnb/dataprocessing/trinity
Script names:
trinity-hei.slurm
trinity-mal.slurm
trinity-nag.slurm
trinity-tam.slurm
blat-hei.slurm
blat-mal.slurm
blat-nag.slurm
blat-tam.slurm
These scripts also need to be cleaned up as well. Remove line comments that are no longer relevant, etc.