Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Spring 10, Summer 1, Summer 2
Description
Situation: The RNA-Seq Quickload needs reorganizing prior to the ASPB workshop. Specifically, the Muday Lab folder is currently organized in a way that makes sense, but I think that we could optimize this folder for the workshop by organizing it a bit differently.
Tasks:
1. Reorganize the Muday Lab folder:
- List all of the A (are) samples first, then V (VF36), then F (VF36-F3H-T3).
- Within each of these subgroups, keep them listed in order first by time point, then by temperature, then by replicate.
- Do this for all three subfolders (Reads, Coverage Graphs, and Junctions).
2. Give the last folder in the tomato RNA-Seq Quickload ("SRP328042 - anther development under simulated drought stress") a name that matches with the other folders. I believe the PI associated with that SRP data is Gang Lu. Here's a link to their paper: https://www.mdpi.com/2073-4409/10/7/1809.
With all of this information, the title of the folder after renaming should be something like "Lu Lab - anther, # varieties, drought stress, # minutes (SRP328042)".
Attachments
Issue Links
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2809 [ 19325 ] |
| Rank | Ranked higher |
| Sprint | Spring 10 [ 194 ] | Spring 10, Summer 1 [ 194, 195 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Ann Loraine [ aloraine ] | Paige Kulzer [ pkulzer ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Sprint | Spring 10, Summer 1 [ 194, 195 ] | Spring 10, Summer 1, Summer 2 [ 194, 195, 196 ] |
| Rank | Ranked higher |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |