Details
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Type:
Epic
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Epic Name:Prepare for 2024 SDB poster and booth presentations
Description
Conference dates: July 14-17, 2024
Link to conference program: https://www.sdbonline.org/2024mtg_program
Paige and Nowlan departing Sunday July 14
Note: Paige is available up to including June 29 (after that on vacation for a bit - returning July 3)
Attachments
Issue Links
Activity
| Field | Original Value | New Value |
|---|---|---|
| Summary | Put together materials for the SDB Poster Presentation | 2024 SDB Poster Presentation |
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| Epic Child |
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| Summary | 2024 SDB Poster Presentation | 2024 SDB poster and booth presentations |
| Summary | 2024 SDB poster and booth presentations | Prepare for 2024 SDB poster and booth presentations |
| Epic Name | 2024 SDB Poster Presentation | Prepare for 2024 SDB poster and booth presentations |
| Description |
Conference dates: July 14-17, 2024
Link to conference program: https://www.sdbonline.org/2024mtg_program |
Conference dates: July 14-17, 2024
Link to conference program: https://www.sdbonline.org/2024mtg_program Paige and Nowlan departing Sunday July 14 |
| Description |
Conference dates: July 14-17, 2024
Link to conference program: https://www.sdbonline.org/2024mtg_program Paige and Nowlan departing Sunday July 14 |
Conference dates: July 14-17, 2024
Link to conference program: https://www.sdbonline.org/2024mtg_program Paige and Nowlan departing Sunday July 14 Note: Paige is available up to including June 29 (after that on vacation for a bit) |
| Description |
Conference dates: July 14-17, 2024
Link to conference program: https://www.sdbonline.org/2024mtg_program Paige and Nowlan departing Sunday July 14 Note: Paige is available up to including June 29 (after that on vacation for a bit) |
Conference dates: July 14-17, 2024
Link to conference program: https://www.sdbonline.org/2024mtg_program Paige and Nowlan departing Sunday July 14 Note: Paige is available up to including June 29 (after that on vacation for a bit - returning July 3) |
| Epic Child | IGBF-3791 [ 23010 ] |
| Comment |
[ *Title*: A new genome visualization resource for exploring and visually analyzing RNA-Seq gene expression data for tardigrades (Hypsibius exemplaris and Ramazzottius varieornatus)
*Abstract*: The tardigrade species Hypsibius exemplaris is an emerging model system for understanding the evolution of animal development. Its transparent embryos, rapid generation time, ease of cultivation in laboratory settings, and small genome size make this microscopic invertebrate amenable to genome-scale assays such as RNA-Seq gene expression analysis. Other tardigrade species, including Ramazzottius varieornatus, offer models for studying resilience in the face of extreme environmental stresses, such as ionizing radiation. However, advanced genomics visualization resources for tardigrade species are lacking in comparison to other invertebrates important in developmental biology and stress resilience studies. To address this, we developed a new genome browser resource for tardigrades using the Integrated Genome Browser, an open-source genome browser well-suited for visual analysis of functional genomics data sets, especially data from scaffold (incomplete) genome assemblies like those currently available for tardigrades. This new resource contains published RNA-Seq datasets downloaded from public archives as original sequence data and then re-aligned to tardigrade genome assemblies downloaded from Genbank. The re-processed data includes sequence alignments, useful for comparing genetic differences across species, and scaled coverage graphs, useful for observing differentially expressed genes between experimental samples. In addition, researchers can use the browser to visualize their own data alongside the public, re-processed data, making it easier to interpret their work and understand its signi cance and impact. The Integrated Genome Browser is freely-available from bioviz.org. An award from NIH NIGMS (R35GM139609) provided funding. ] |
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| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |