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  1. IGB
  2. IGBF-3761

Compile resources for the ASPB workshop's Canvas page

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.

          Tasks:
          1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources:

          • Instructions for downloading and installing IGB Added to Canvas course as PDF
          • Copy of the preprint article - Nowlan Added to Canvas course as PDF
          • Link to NSF award page/copy of NSF award - Nowlan Added link to comments below
          • Link to the data online where workshop attendees can download the seq data Added this link and the NSF award link to Canvas
          • Copy of the slidedeck (both intro and content slides) Added to Canvas course as PDF
          • List of the most differentially expressed genes in the are mutant (from one of the figures) Ann's comment: we can pick another gene if we want. I recommend looking at the statistical analysis results files and picking something with average expression around 20 or more, with absolute value log2 fold-change > 2 with small (< 0.001) nominal and adjusted p-value. Added to Canvas course as PDF
          • Scaled coverage graph documentation - Nowlan Added to Canvas course as PDF

          2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by clicking here.

          Link to the workshop's Canvas page: https://canvas.instructure.com/courses/9522993/modules

            Attachments

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              relates to

              Task - A task that needs to be done. IGBF-3773 Demonstrate how to investigate effects of a sequence mutation - learning activity from ASPB workshop

              • Major - Major loss of function.
              • To-Do

              Task - A task that needs to be done. IGBF-3744 Finalize a workshop outline for ASPB 2024

              • Major - Major loss of function.
              • Closed

                Activity

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                nfreese Nowlan Freese added a comment -

                Link to NSF award page/copy of NSF award -> https://www.nsf.gov/awardsearch/showAward?AWD_ID=1939255

                Show
                nfreese Nowlan Freese added a comment - Link to NSF award page/copy of NSF award -> https://www.nsf.gov/awardsearch/showAward?AWD_ID=1939255
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                nfreese Nowlan Freese added a comment - - edited

                Scaled coverage graph documentation - working on a document here

                UPDATED - PDF has been added to Canvas Course with additional information about coverage graph and scaled coverage graphs.

                Show
                nfreese Nowlan Freese added a comment - - edited Scaled coverage graph documentation - working on a document here UPDATED - PDF has been added to Canvas Course with additional information about coverage graph and scaled coverage graphs.
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                pkulzer Paige Kulzer added a comment - - edited

                Link to the Muday data online - https://data.bioviz.org/hotpollen/S_lycopersicum_Jun_2022/muday-2022-timeseries/

                Comment from Ann:

                IMPORTANT:

                Please do not distribute this URL. This URL will likely change. Instead, users should access the data from the IGB Data Access panel.

                Show
                pkulzer Paige Kulzer added a comment - - edited Link to the Muday data online - https://data.bioviz.org/hotpollen/S_lycopersicum_Jun_2022/muday-2022-timeseries/ Comment from Ann: IMPORTANT : Please do not distribute this URL. This URL will likely change. Instead, users should access the data from the IGB Data Access panel.
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                ann.loraine Ann Loraine added a comment - - edited

                IMPORTANT:

                Please do not save a copy of the preprint article in our Canvas Course. Instead, link directly to the page for the article on BioRxiv. From there, participants can easily see the link to the latest version available there. They can also see a link to the published article. Do NOT distribute a draft article in our Canvas course but instead just refer visitors the authoritative location for the article - the BioRxiv page.

                The current link is: https://www.biorxiv.org/content/10.1101/2023.12.23.573189v2

                UPDATED - removed PDF and created page with link to BioRxiv page

                Show
                ann.loraine Ann Loraine added a comment - - edited IMPORTANT : Please do not save a copy of the preprint article in our Canvas Course. Instead, link directly to the page for the article on BioRxiv. From there, participants can easily see the link to the latest version available there. They can also see a link to the published article. Do NOT distribute a draft article in our Canvas course but instead just refer visitors the authoritative location for the article - the BioRxiv page. The current link is: https://www.biorxiv.org/content/10.1101/2023.12.23.573189v2 UPDATED - removed PDF and created page with link to BioRxiv page
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                pkulzer Paige Kulzer added a comment -

                FIXED Link to the Muday data online - https://www.ncbi.nlm.nih.gov/Traces/study/?query_key=4&WebEnv=MCID_665f0840b6fda62199743260&o=acc_s%3Aa

                Show
                pkulzer Paige Kulzer added a comment - FIXED Link to the Muday data online - https://www.ncbi.nlm.nih.gov/Traces/study/?query_key=4&WebEnv=MCID_665f0840b6fda62199743260&o=acc_s%3Aa
                Hide
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                pkulzer Paige Kulzer added a comment -

                All of the necessary workshop materials have been added to the Canvas course. I've created a separate ticket for creating and uploading bonus materials to the course, see IGBF-3773.

                Closing this ticket.

                Show
                pkulzer Paige Kulzer added a comment - All of the necessary workshop materials have been added to the Canvas course. I've created a separate ticket for creating and uploading bonus materials to the course, see IGBF-3773 . Closing this ticket.

                  People

                  • Assignee:
                    pkulzer Paige Kulzer
                    Reporter:
                    pkulzer Paige Kulzer
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