Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Summer 1, Summer 2
Description
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks:
1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources:
Instructions for downloading and installing IGBAdded to Canvas course as PDFCopy of the preprint article - NowlanAdded to Canvas course as PDFLink to NSF award page/copy of NSF award - NowlanAdded link to comments belowLink to the data online where workshop attendees can download the seq dataAdded this link and the NSF award link to CanvasCopy of the slidedeck (both intro and content slides)Added to Canvas course as PDFList of the most differentially expressed genes in the are mutant (from one of the figures) Ann's comment: we can pick another gene if we want. I recommend looking at the statistical analysis results files and picking something with average expression around 20 or more, with absolute value log2 fold-change > 2 with small (< 0.001) nominal and adjusted p-value.Added to Canvas course as PDFScaled coverage graph documentation - NowlanAdded to Canvas course as PDF
2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by clicking here.
Link to the workshop's Canvas page: https://canvas.instructure.com/courses/9522993/modules
Attachments
Issue Links
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-3532 [ 22751 ] |
| Description |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * Instructions for downloading and installing IGB * Copy of the preprint article * Link to NSF award page/copy of NSF award * Link to the data online where workshop attendees can down the seq data * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) * Scaled coverage graph documentation * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * Instructions for downloading and installing IGB * Copy of the preprint article * Link to NSF award page/copy of NSF award * Link to the data online where workshop attendees can down the seq data * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) * Scaled coverage graph documentation * YouTube channel/email info/ways users can reach out to us * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
| Description |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * Instructions for downloading and installing IGB * Copy of the preprint article * Link to NSF award page/copy of NSF award * Link to the data online where workshop attendees can down the seq data * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) * Scaled coverage graph documentation * YouTube channel/email info/ways users can reach out to us * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * Instructions for downloading and installing IGB * Copy of the preprint article - Nowlan * Link to NSF award page/copy of NSF award - Nowlan * Link to the data online where workshop attendees can download the seq data * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) * Scaled coverage graph documentation * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
| Description |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * Instructions for downloading and installing IGB * Copy of the preprint article - Nowlan * Link to NSF award page/copy of NSF award - Nowlan * Link to the data online where workshop attendees can download the seq data * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) * Scaled coverage graph documentation * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * Instructions for downloading and installing IGB * Copy of the preprint article - *Nowlan* * Link to NSF award page/copy of NSF award - *Nowlan* * Link to the data online where workshop attendees can download the seq data * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) * Scaled coverage graph documentation * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
| Description |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * Instructions for downloading and installing IGB * Copy of the preprint article - *Nowlan* * Link to NSF award page/copy of NSF award - *Nowlan* * Link to the data online where workshop attendees can download the seq data * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) * Scaled coverage graph documentation * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * Instructions for downloading and installing IGB * Copy of the preprint article - *Nowlan* * Link to NSF award page/copy of NSF award - *Nowlan* * Link to the data online where workshop attendees can download the seq data * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) * Scaled coverage graph documentation - *Nowlan* * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
| Description |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * Instructions for downloading and installing IGB * Copy of the preprint article - *Nowlan* * Link to NSF award page/copy of NSF award - *Nowlan* * Link to the data online where workshop attendees can download the seq data * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) * Scaled coverage graph documentation - *Nowlan* * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * Instructions for downloading and installing IGB * -Copy of the preprint article - *Nowlan*- * Link to NSF award page/copy of NSF award - *Nowlan* * Link to the data online where workshop attendees can download the seq data * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) * Scaled coverage graph documentation - *Nowlan* * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
| Description |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * Instructions for downloading and installing IGB * -Copy of the preprint article - *Nowlan*- * Link to NSF award page/copy of NSF award - *Nowlan* * Link to the data online where workshop attendees can download the seq data * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) * Scaled coverage graph documentation - *Nowlan* * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * Instructions for downloading and installing IGB * -Copy of the preprint article - *Nowlan*- Added to Canvas course as PDF * -Link to NSF award page/copy of NSF award - *Nowlan*- Added link to comments below * Link to the data online where workshop attendees can download the seq data * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) * Scaled coverage graph documentation - *Nowlan* * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
Scaled coverage graph documentation - working on a document here
UPDATED - PDF has been added to Canvas Course with additional information about coverage graph and scaled coverage graphs.
| Description |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * Instructions for downloading and installing IGB * -Copy of the preprint article - *Nowlan*- Added to Canvas course as PDF * -Link to NSF award page/copy of NSF award - *Nowlan*- Added link to comments below * Link to the data online where workshop attendees can download the seq data * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) * Scaled coverage graph documentation - *Nowlan* * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * -Instructions for downloading and installing IGB- Added to Canvas course as PDF * -Copy of the preprint article - *Nowlan*- Added to Canvas course as PDF * -Link to NSF award page/copy of NSF award - *Nowlan*- Added link to comments below * Link to the data online where workshop attendees can download the seq data * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) * Scaled coverage graph documentation - *Nowlan* * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Link to the Muday data online - https://data.bioviz.org/hotpollen/S_lycopersicum_Jun_2022/muday-2022-timeseries/
Comment from Ann:
IMPORTANT:
Please do not distribute this URL. This URL will likely change. Instead, users should access the data from the IGB Data Access panel.
| Description |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * -Instructions for downloading and installing IGB- Added to Canvas course as PDF * -Copy of the preprint article - *Nowlan*- Added to Canvas course as PDF * -Link to NSF award page/copy of NSF award - *Nowlan*- Added link to comments below * Link to the data online where workshop attendees can download the seq data * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) * Scaled coverage graph documentation - *Nowlan* * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * -Instructions for downloading and installing IGB- Added to Canvas course as PDF * -Copy of the preprint article - *Nowlan*- Added to Canvas course as PDF * -Link to NSF award page/copy of NSF award - *Nowlan*- Added link to comments below * -Link to the data online where workshop attendees can download the seq data- Added this link and the NSF award link to Canvas * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) * Scaled coverage graph documentation - *Nowlan* * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
IMPORTANT:
Please do not save a copy of the preprint article in our Canvas Course. Instead, link directly to the page for the article on BioRxiv. From there, participants can easily see the link to the latest version available there. They can also see a link to the published article. Do NOT distribute a draft article in our Canvas course but instead just refer visitors the authoritative location for the article - the BioRxiv page.
The current link is: https://www.biorxiv.org/content/10.1101/2023.12.23.573189v2
UPDATED - removed PDF and created page with link to BioRxiv page
| Description |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * -Instructions for downloading and installing IGB- Added to Canvas course as PDF * -Copy of the preprint article - *Nowlan*- Added to Canvas course as PDF * -Link to NSF award page/copy of NSF award - *Nowlan*- Added link to comments below * -Link to the data online where workshop attendees can download the seq data- Added this link and the NSF award link to Canvas * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) * Scaled coverage graph documentation - *Nowlan* * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * -Instructions for downloading and installing IGB- Added to Canvas course as PDF * -Copy of the preprint article - *Nowlan*- Added to Canvas course as PDF * -Link to NSF award page/copy of NSF award - *Nowlan*- Added link to comments below * -Link to the data online where workshop attendees can download the seq data- Added this link and the NSF award link to Canvas * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) *Ann's comment*: we can pick another gene if we want. I recommend looking at the statistical analysis results files and picking something with average expression around 20 or more, with an at least 4x log2 fold-change and a very small (< 0.001) nominal and adjusted p-value * Scaled coverage graph documentation - *Nowlan* * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
| Description |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * -Instructions for downloading and installing IGB- Added to Canvas course as PDF * -Copy of the preprint article - *Nowlan*- Added to Canvas course as PDF * -Link to NSF award page/copy of NSF award - *Nowlan*- Added link to comments below * -Link to the data online where workshop attendees can download the seq data- Added this link and the NSF award link to Canvas * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) *Ann's comment*: we can pick another gene if we want. I recommend looking at the statistical analysis results files and picking something with average expression around 20 or more, with an at least 4x log2 fold-change and a very small (< 0.001) nominal and adjusted p-value * Scaled coverage graph documentation - *Nowlan* * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * -Instructions for downloading and installing IGB- Added to Canvas course as PDF * -Copy of the preprint article - *Nowlan*- Added to Canvas course as PDF * -Link to NSF award page/copy of NSF award - *Nowlan*- Added link to comments below * -Link to the data online where workshop attendees can download the seq data- Added this link and the NSF award link to Canvas * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) *Ann's comment*: we can pick another gene if we want. I recommend looking at the statistical analysis results files and picking something with average expression around 20 or more, with absolute value log2 fold-change > 2 with small (< 0.001) nominal and adjusted p-value. * Scaled coverage graph documentation - *Nowlan* * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
| Description |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * -Instructions for downloading and installing IGB- Added to Canvas course as PDF * -Copy of the preprint article - *Nowlan*- Added to Canvas course as PDF * -Link to NSF award page/copy of NSF award - *Nowlan*- Added link to comments below * -Link to the data online where workshop attendees can download the seq data- Added this link and the NSF award link to Canvas * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) *Ann's comment*: we can pick another gene if we want. I recommend looking at the statistical analysis results files and picking something with average expression around 20 or more, with absolute value log2 fold-change > 2 with small (< 0.001) nominal and adjusted p-value. * Scaled coverage graph documentation - *Nowlan* * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * -Instructions for downloading and installing IGB- Added to Canvas course as PDF * -Copy of the preprint article - *Nowlan*- Added to Canvas course as PDF * -Link to NSF award page/copy of NSF award - *Nowlan*- Added link to comments below * -Link to the data online where workshop attendees can download the seq data- Added this link and the NSF award link to Canvas * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) *Ann's comment*: we can pick another gene if we want. I recommend looking at the statistical analysis results files and picking something with average expression around 20 or more, with absolute value log2 fold-change > 2 with small (< 0.001) nominal and adjusted p-value. * -Scaled coverage graph documentation - *Nowlan*- Added to Canvas course as PDF * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
FIXED Link to the Muday data online - https://www.ncbi.nlm.nih.gov/Traces/study/?query_key=4&WebEnv=MCID_665f0840b6fda62199743260&o=acc_s%3Aa
| Description |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * -Instructions for downloading and installing IGB- Added to Canvas course as PDF * -Copy of the preprint article - *Nowlan*- Added to Canvas course as PDF * -Link to NSF award page/copy of NSF award - *Nowlan*- Added link to comments below * -Link to the data online where workshop attendees can download the seq data- Added this link and the NSF award link to Canvas * Copy of the slidedeck (both intro and content slides) * List of the most differentially expressed genes in the are mutant (from one of the figures) *Ann's comment*: we can pick another gene if we want. I recommend looking at the statistical analysis results files and picking something with average expression around 20 or more, with absolute value log2 fold-change > 2 with small (< 0.001) nominal and adjusted p-value. * -Scaled coverage graph documentation - *Nowlan*- Added to Canvas course as PDF * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * -Instructions for downloading and installing IGB- Added to Canvas course as PDF * -Copy of the preprint article - *Nowlan*- Added to Canvas course as PDF * -Link to NSF award page/copy of NSF award - *Nowlan*- Added link to comments below * -Link to the data online where workshop attendees can download the seq data- Added this link and the NSF award link to Canvas * Copy of the slidedeck (both intro and content slides) * -List of the most differentially expressed genes in the are mutant (from one of the figures) *Ann's comment*: we can pick another gene if we want. I recommend looking at the statistical analysis results files and picking something with average expression around 20 or more, with absolute value log2 fold-change > 2 with small (< 0.001) nominal and adjusted p-value.- Added to Canvas course as PDF * -Scaled coverage graph documentation - *Nowlan*- Added to Canvas course as PDF * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
| Sprint | Summer 1 [ 195 ] | Summer 1, Summer 2 [ 195, 196 ] |
| Rank | Ranked higher |
| Description |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * -Instructions for downloading and installing IGB- Added to Canvas course as PDF * -Copy of the preprint article - *Nowlan*- Added to Canvas course as PDF * -Link to NSF award page/copy of NSF award - *Nowlan*- Added link to comments below * -Link to the data online where workshop attendees can download the seq data- Added this link and the NSF award link to Canvas * Copy of the slidedeck (both intro and content slides) * -List of the most differentially expressed genes in the are mutant (from one of the figures) *Ann's comment*: we can pick another gene if we want. I recommend looking at the statistical analysis results files and picking something with average expression around 20 or more, with absolute value log2 fold-change > 2 with small (< 0.001) nominal and adjusted p-value.- Added to Canvas course as PDF * -Scaled coverage graph documentation - *Nowlan*- Added to Canvas course as PDF * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/1163700/modules |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * -Instructions for downloading and installing IGB- Added to Canvas course as PDF * -Copy of the preprint article - *Nowlan*- Added to Canvas course as PDF * -Link to NSF award page/copy of NSF award - *Nowlan*- Added link to comments below * -Link to the data online where workshop attendees can download the seq data- Added this link and the NSF award link to Canvas * Copy of the slidedeck (both intro and content slides) * -List of the most differentially expressed genes in the are mutant (from one of the figures) *Ann's comment*: we can pick another gene if we want. I recommend looking at the statistical analysis results files and picking something with average expression around 20 or more, with absolute value log2 fold-change > 2 with small (< 0.001) nominal and adjusted p-value.- Added to Canvas course as PDF * -Scaled coverage graph documentation - *Nowlan*- Added to Canvas course as PDF * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/9522993/modules |
| Description |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * -Instructions for downloading and installing IGB- Added to Canvas course as PDF * -Copy of the preprint article - *Nowlan*- Added to Canvas course as PDF * -Link to NSF award page/copy of NSF award - *Nowlan*- Added link to comments below * -Link to the data online where workshop attendees can download the seq data- Added this link and the NSF award link to Canvas * Copy of the slidedeck (both intro and content slides) * -List of the most differentially expressed genes in the are mutant (from one of the figures) *Ann's comment*: we can pick another gene if we want. I recommend looking at the statistical analysis results files and picking something with average expression around 20 or more, with absolute value log2 fold-change > 2 with small (< 0.001) nominal and adjusted p-value.- Added to Canvas course as PDF * -Scaled coverage graph documentation - *Nowlan*- Added to Canvas course as PDF * *Bonus activity*: Identify what changes the SNP at the F3H gene in the are genotype makes to the amino acid at that position. Did it introduce a stop codon or something else? Or was the amino acid the same? Predict how the protein function might be different based on that SNP. 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/9522993/modules |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * -Instructions for downloading and installing IGB- Added to Canvas course as PDF * -Copy of the preprint article - *Nowlan*- Added to Canvas course as PDF * -Link to NSF award page/copy of NSF award - *Nowlan*- Added link to comments below * -Link to the data online where workshop attendees can download the seq data- Added this link and the NSF award link to Canvas * Copy of the slidedeck (both intro and content slides) * -List of the most differentially expressed genes in the are mutant (from one of the figures) *Ann's comment*: we can pick another gene if we want. I recommend looking at the statistical analysis results files and picking something with average expression around 20 or more, with absolute value log2 fold-change > 2 with small (< 0.001) nominal and adjusted p-value.- Added to Canvas course as PDF * -Scaled coverage graph documentation - *Nowlan*- Added to Canvas course as PDF 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/9522993/modules |
| Description |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * -Instructions for downloading and installing IGB- Added to Canvas course as PDF * -Copy of the preprint article - *Nowlan*- Added to Canvas course as PDF * -Link to NSF award page/copy of NSF award - *Nowlan*- Added link to comments below * -Link to the data online where workshop attendees can download the seq data- Added this link and the NSF award link to Canvas * Copy of the slidedeck (both intro and content slides) * -List of the most differentially expressed genes in the are mutant (from one of the figures) *Ann's comment*: we can pick another gene if we want. I recommend looking at the statistical analysis results files and picking something with average expression around 20 or more, with absolute value log2 fold-change > 2 with small (< 0.001) nominal and adjusted p-value.- Added to Canvas course as PDF * -Scaled coverage graph documentation - *Nowlan*- Added to Canvas course as PDF 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/9522993/modules |
Situation: There are various resources/handout materials that need to be distributed for the upcoming ASPB workshop. A Canvas page has been created for this purpose, but nothing has been added to it yet.
Tasks: 1. Update the Plant Biology IGB Workshop 2024 Canvas page with the following resources: * -Instructions for downloading and installing IGB- Added to Canvas course as PDF * -Copy of the preprint article - *Nowlan*- Added to Canvas course as PDF * -Link to NSF award page/copy of NSF award - *Nowlan*- Added link to comments below * -Link to the data online where workshop attendees can download the seq data- Added this link and the NSF award link to Canvas * -Copy of the slidedeck (both intro and content slides)- Added to Canvas course as PDF * -List of the most differentially expressed genes in the are mutant (from one of the figures) *Ann's comment*: we can pick another gene if we want. I recommend looking at the statistical analysis results files and picking something with average expression around 20 or more, with absolute value log2 fold-change > 2 with small (< 0.001) nominal and adjusted p-value.- Added to Canvas course as PDF * -Scaled coverage graph documentation - *Nowlan*- Added to Canvas course as PDF 2. Organize these resources into Modules. See the Course Modules page from a previous IGB workshop by [clicking here|https://canvas.instructure.com/courses/1163700/modules]. *Link to the workshop's Canvas page:* https://canvas.instructure.com/courses/9522993/modules |
All of the necessary workshop materials have been added to the Canvas course. I've created a separate ticket for creating and uploading bonus materials to the course, see IGBF-3773.
Closing this ticket.
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Link to NSF award page/copy of NSF award -> https://www.nsf.gov/awardsearch/showAward?AWD_ID=1939255