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  1. IGB
  2. IGBF-3763

Explore Visualizing graphs from Trinity using BANDAGE

        Details

        • Type: Task
        • Status: To-Do (View Workflow)
        • Priority: Trivial
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          Bandage is a program for visualising de novo assembly graphs. By displaying connections which are not present in the contigs file, Bandage opens up new possibilities for analysing de novo assemblies.

          https://rrwick.github.io/Bandage/

          Let's take a look at how this wool works and see if we can look at our Trinity results to see how the graphs are made. We ccan take a look at the same genes in IGB as well.

          Look at gene in this.
          Look at genes via Nextflow alignments (typical way)
          Look at BLAt derived alignments of Trinity in IGB.

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              robofjoy Robert Reid created issue -
              robofjoy Robert Reid made changes -
              Field Original Value New Value
              Epic Link IGBF-2993 [ 21429 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ]
              ann.loraine Ann Loraine made changes -
              Sprint Summer 2 [ 196 ] Summer 2, Summer 3 [ 196, 197 ]
              ann.loraine Ann Loraine made changes -
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              ann.loraine Ann Loraine made changes -
              Sprint Summer 2, Summer 3 [ 196, 197 ] Summer 2, Summer 3, Summer 4 [ 196, 197, 198 ]
              ann.loraine Ann Loraine made changes -
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              ann.loraine Ann Loraine made changes -
              Sprint Summer 2, Summer 3, Summer 4 [ 196, 197, 198 ] Summer 2, Summer 3, Summer 4, Summer 5 [ 196, 197, 198, 199 ]
              ann.loraine Ann Loraine made changes -
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              ann.loraine Ann Loraine made changes -
              Sprint Summer 2, Summer 3, Summer 4, Summer 5 [ 196, 197, 198, 199 ] Summer 2, Summer 3, Summer 4, Summer 5, Summer 6 [ 196, 197, 198, 199, 200 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              ann.loraine Ann Loraine made changes -
              Sprint Summer 2, Summer 3, Summer 4, Summer 5, Summer 6 [ 196, 197, 198, 199, 200 ] Summer 2, Summer 3, Summer 4, Summer 5, Summer 6, Summer 7 [ 196, 197, 198, 199, 200, 201 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              ann.loraine Ann Loraine made changes -
              Sprint Summer 2, Summer 3, Summer 4, Summer 5, Summer 6, Summer 7 [ 196, 197, 198, 199, 200, 201 ] Summer 2, Summer 3, Summer 4, Summer 5, Summer 6 [ 196, 197, 198, 199, 200 ]

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                • Assignee:
                  Unassigned
                  Reporter:
                  robofjoy Robert Reid
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                  Dates

                  • Created:
                    Updated: