Changes have been pushed to BioViz Connect.

Deployed following instructions from bioviz-connect-playbooks repo with:

ansible-playbook -i inventory.ini setup.yml

See my comment in IGBF-3402 on how to delegate such that the sync_app task can be run correctly. Otherwise, remove the sync_app role from setup.yml and manually call the sync app endpoint:

https://connect.bioviz.org/SyncAppDataToBioViz/?accesstoken=<validKeyCloakAccessToken>

Testing:
Searching in BioViz Connect for ".bam" returns files that end in .bam. I am able to click the View in IGB button and the data load in IGB.

Closing ticket.

As per discussion during scrum today, re-assigning to NF for him to deploy the new code and the new SSL certificates to the production site when ready.

Assigning this to me since re-activating the testing host is something I will need to do before Nowlan Freese can proceed with testing.

Also, I would like to move this to the next sprint when I will have time to do the necessary work.

PR merged

Ann Loraine - I am unable to connect to the bvcprod2 instance either with the bioviz-connect-playbooks or through ssh. I was able to use the ansible playbooks a few months ago (see my notes on IGBF-3550), so I'm not sure what has changed.

To Test:

• Pull the branch and run Bioviz Connect in your local system
• Add a search text (eg. '.bam', 'fasta') in the search bar on top of the page
• Click on the magnifying glass button next to the search bar
• If search results appear as expected, the solution works
• Click on top of the titles of the columns of the table to sort
• If the table sorts as expected, the solution works

The response JSON from the search API request has been changed by Cyverse. After the user searches for something, we need to list all the files and folders with name similar to the search key. We also need to group it as folders and files and for that we use the document type value in the response JSON. Before, this value had the key, '_type', now, 'doc_type'. Secondly, the position of this key-value pair has changed.

# Before:
response_json['hits'][0]['_type']

## where the response_json, as the name suggests, is the response we get. 'hits' is the key for the list in that json with all the folders and files listed.

# Now its changed to
response_json['hits'][0]['_source']['doc_type']

See commit