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  1. IGB
  2. IGBF-3790

Run nf-core/rnaseq v 3.14 on SRP484252 (2024 Goldstein Lab)

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          For this task, create RNA-Seq alignments files (BAM), junction files (bed.gz), and scaled coverage graphs (bedgraph.gz) for data set SRP484252, submitted to Sequence Read Archive by Goldstein Lab at UNC Chapel Hill in 2024.

          All code will be saved to main branch in this repository - see: https://bitbucket.org/lorainelab/tardigrade/src/main/

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              relates to

              Task - A task that needs to be done. IGBF-3849 Process SRP454305 Goldstein Irradiation 2024 data set

              • Major - Major loss of function.
              • In Progress

              Task - A task that needs to be done. IGBF-3721 Document Tardigrade RNA-Seq Pipeline

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3735 Run the latest version of the nf-core/rnaseq pipeline with tardigrade data

              • Major - Major loss of function.
              • Closed

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                  • Assignee:
                    Unassigned
                    Reporter:
                    ann.loraine Ann Loraine
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                    • Created:
                      Updated:
                      Resolved: