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  1. IGB
  2. IGBF-3805

Apply RadViz to Seurat ClusteringTutorial

        Details

        • Type: Task
        • Status: To-Do (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          To gain a high level understanding of RadViz, go through the Seurat guided clustering tutorial of PBMC 3K dataset and apply RadViz to the dataset. Goal is to understand the thought process of choosing anchors for a meaningful visualizations, the use of color and other dimensions for further pattern recognition and discern the value of RadViz in single cell data.

          Seurat Guided Clustering Tutorial: https://satijalab.org/seurat/articles/pbmc3k_tutorial

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              karthik Karthik Raveendran created issue -
              karthik Karthik Raveendran made changes -
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              Status To-Do [ 10305 ] In Progress [ 3 ]
              karthik Karthik Raveendran made changes -
              Description To gain a high level understanding of RadViz, go through the Seurat guided clustering tutorial of PBMC 3K dataset and apply RadViz to the dataset. Goal is to understand the thought process of choosing anchors for a meaningful visualizations, the use of color and other dimensions for further pattern recognition and discern the value of RadViz in single cell data. To gain a high level understanding of RadViz, go through the Seurat guided clustering tutorial of PBMC 3K dataset and apply RadViz to the dataset. Goal is to understand the thought process of choosing anchors for a meaningful visualizations, the use of color and other dimensions for further pattern recognition and discern the value of RadViz in single cell data.

              Seurat Guided Clustering Tutorial: https://satijalab.org/seurat/articles/pbmc3k_tutorial
              karthik Karthik Raveendran made changes -
              Epic Link IGBF-3765 [ 22984 ]
              ann.loraine Ann Loraine made changes -
              Sprint Summer 3 [ 197 ] Summer 3, Summer 4 [ 197, 198 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              karthik Karthik Raveendran made changes -
              Status In Progress [ 3 ] To-Do [ 10305 ]
              karthik Karthik Raveendran made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              ann.loraine Ann Loraine made changes -
              Sprint Summer 3, Summer 4 [ 197, 198 ] Summer 3, Summer 4, Summer 5 [ 197, 198, 199 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              ann.loraine Ann Loraine made changes -
              Sprint Summer 3, Summer 4, Summer 5 [ 197, 198, 199 ] Summer 3, Summer 4, Summer 5, Summer 6 [ 197, 198, 199, 200 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              karthik Karthik Raveendran made changes -
              Status In Progress [ 3 ] To-Do [ 10305 ]
              ann.loraine Ann Loraine made changes -
              Sprint Summer 3, Summer 4, Summer 5, Summer 6 [ 197, 198, 199, 200 ] Summer 3, Summer 4, Summer 5 [ 197, 198, 199 ]
              ann.loraine Ann Loraine made changes -
              Assignee Karthik Raveendran [ karthik ]

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                  Reporter:
                  karthik Karthik Raveendran
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                  • Created:
                    Updated: