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  1. IGB
  2. IGBF-3813

Investigate the SLF4j error and the MissingResourceException issue for the properties file

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: 10.1.0
        • Labels:
          None

          Description

          When a properties file is created and used in the code to read from it, it's not working and throws an error. Below is the error:

          ERROR : bundle igb:10.1.0 (40)[com.affymetrix.igb.prefs.IgbPreferencesLoadingOrchestrator(44)] : The activate method has thrown an exception
          java.util.MissingResourceException: Can't find bundle for base name ucsc, locale en_US
          at java.base/java.util.ResourceBundle.throwMissingResourceException(ResourceBundle.java:2059)
          at java.base/java.util.ResourceBundle.getBundleImpl(ResourceBundle.java:1697)
          at java.base/java.util.ResourceBundle.getBundleImpl(ResourceBundle.java:1600)
          at java.base/java.util.ResourceBundle.getBundleImpl(ResourceBundle.java:1555)
          at java.base/java.util.ResourceBundle.getBundle(ResourceBundle.java:861)
          at org.lorainelab.igb.ucsc.rest.api.service.UCSCRestApiDataProvider.<init>(UCSCRestApiDataProvider.java:39)

          Also, observed this error log for testcases in few modules:
          SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
          SLF4J: Defaulting to no-operation (NOP) logger implementation
          SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.

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              relates to

              Task - A task that needs to be done. IGBF-3807 Create link outs for UCSC REST data sets / files

              • Major - Major loss of function.
              • Closed

                Activity

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                nfreese Nowlan Freese added a comment -

                Tested with main branch installer on Mac.

                Link outs to UCSC REST are working, no issues in log.

                Closing ticket.

                Show
                nfreese Nowlan Freese added a comment - Tested with main branch installer on Mac. Link outs to UCSC REST are working, no issues in log. Closing ticket.
                Hide
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                ann.loraine Ann Loraine added a comment -

                PR is merged and new installers deployed to bioviz.org. Ready for testing.

                Show
                ann.loraine Ann Loraine added a comment - PR is merged and new installers deployed to bioviz.org. Ready for testing.
                Hide
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                jsirigin Jaya Sravani Sirigineedi added a comment -

                Here is the Pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/1030

                Show
                jsirigin Jaya Sravani Sirigineedi added a comment - Here is the Pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/1030
                Hide
                Permalink
                nfreese Nowlan Freese added a comment -

                Tested Sravani's branch on Mac.

                Linkouts were working correctly, and as far as I could find all of the code was renamed.

                Ready for pull request.

                Show
                nfreese Nowlan Freese added a comment - Tested Sravani's branch on Mac. Linkouts were working correctly, and as far as I could find all of the code was renamed. Ready for pull request.
                Hide
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                jsirigin Jaya Sravani Sirigineedi added a comment -

                Updated the code to rename the variable to "datasetLinkoutDomainUrl" and here is the branch: https://bitbucket.org/jaya-sravani/integrated-genome-browser/branch/IGBF-3813 Please review and let me know if there are any issues.

                Show
                jsirigin Jaya Sravani Sirigineedi added a comment - Updated the code to rename the variable to "datasetLinkoutDomainUrl" and here is the branch: https://bitbucket.org/jaya-sravani/integrated-genome-browser/branch/IGBF-3813 Please review and let me know if there are any issues.
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                  People

                  • Assignee:
                    jsirigin Jaya Sravani Sirigineedi
                    Reporter:
                    jsirigin Jaya Sravani Sirigineedi
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                    Dates

                    • Created:
                      Updated:
                      Resolved: